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Report for CCDS87376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87376.1 Public Homo sapiens 6 SCAND3 24 110 108 CCDS HistoryNCBI Gene:114821Re-query CCDS DB by CCDS ID:87376.1Re-query CCDS DB by GeneID:114821See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87376.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000646382.1 ENSP00000494942.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646382.1Link to Ensembl Protein Viewer:ENSP00000494942.1Re-query CCDS DB by Nucleotide ID:ENST00000646382Re-query CCDS DB by Protein ID:ENSP00000494942
Original member Current member NCBI NM_001329616.2 NP_001316545.1 Accepted alive Link to Nucleotide Sequence:NM_001329616.2Link to Protein Sequence:NP_001316545.1Re-query CCDS DB by Nucleotide ID:NM_001329616Re-query CCDS DB by Protein ID:NP_001316545Link to BLAST:NP_001316545.1

Chromosomal Locations for CCDS 87376.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28571911 28573827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28574644 28576136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28579272 28579386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3525 nt):
ATGGAAGAAATGATCCCTCTGGATTCTGCAAAGGAGTCTTTAGGCACCCAGCTTCAGTCTATGGAAGATA
GAATGGAATGTGAATCTCCAGAGCCACACCCACTTCAAGATAATGGGTCATTTTTGTGGTTTTCCATGAT
GTCTCAAAGCATGGGTGGTGATAACCTCAGTAGCTTAGATACTAATGAAGCAGAAATTGAACCAGAAAAC
ATGAGAGAAAAGTTCTTCAGAAGCTTAGCAAGGTTACTGGAAAACAAAAGTAATAATACTAAGATATTTT
CTAAAGCAAAGTACTGTCAGTTGATAAAGGAAGTGAAAGAAGCTAAAGCTAAGGCGAAAAAGGAATCAGT
TGACTACCGTCGCTTGGCTAGATTTGATGTTATCCTTGTACAAGGAAATGAGAAGCTAATTGAGGCTGTA
AATGGGGAAACAGATAAAATACGGTATTACTTACACAGTGAGGACTTATTTGACATTCTGCATAATACAC
ATCTCAGCATTGGACATGGTGGACGTACTCGCATGGAGAAAGAGTTACAAGCGAAATACAAGAACATCAC
AAAAGAAGTTATAATGCTGTATCTGACCCTCTGTAAACCATGCCAACAGAAAAATTCAAAACTCAAGAAG
GTTCTAACATCAAAATCAATTAAGGAAGTTAGTTCAAGATGCCAAGTAGATCTTATAGACATGCAGTTGA
ATCCTGATGGGGAGTACAGATTTATTTTGCATTATCAAGATCTCTGTACAAAGTTAACTTTTTTGCGGTC
ATTAAAGTCTAAAAGGCCTACGGAAGTTGCACATGCTCTTTTAGATATATTTACAATTATTGGAGCACCC
AGTGTCCTACAATCTGACAATGGGAGGGAATTTTCAAGCCAGGTTGTCAGTGAACTCAGTAATATTTGGC
CAGAATTGAAAATTGTCCATGGGAAGTCTCAGACCTGCCAAAGCCAGAGTTCTGCAGAACAAACTGAGGA
TATCCGAAAGAGGATTTTCTCCTGGATGCAAACTAACAACTCATCACACTGGACTGAATTTTTGTGGTTC
ATTCAGATGTCCCAAAATCAGCCCTATCACAGAAGCATGCAACAGACTCCATGTGAAAGTGCATTTAGCT
CTGAAGCTAAACTGGGCTTGTCCCATTCTCAGCTAACTGAAGAACTTGTTGCCAGCTTGCATACAGAAAA
TGAATTAGATCAGGCTGACAAAGAGTTAGAAAATACTTTAAGAGCCCAGTATGAAGAAAACATTGAGACT
GGAACAGACAGTAGTGATATTGAAGAGAATCTTTCTGTCACTCCTAAGGTGGCTGAAAAAAGCCCTCCTG
AGAGCAGACTAAGATTTTTATCCTGTGTAGTTTGTGAAAAAGAATGCACAGGTGTTAATAGTTGTATATC
ATGTGATGGAAATATCCATGCAATTTGTGGAGTGCCCTCTCAACATGGGACTGAGGGCTGTGGTCGGCAA
ATAACTTGTAGCCTTTGCTATGAAACCAGCACAATGAAGAGGAAACATGATGAGATTCAAAGAAGTTTGC
CTGTTAAACCTTCCAAAATGCTAAAGCCATCAGGGACACCATTTTCACCAGACAAAGTAGGAGACTGGAT
GGCGAAACAAGCTTCACTGGACTTTTTTGTCAAGAAAAGACATGCCTTTTCTGAACACAGTAGTAGTAAT
AAAAGAAATGTTAACAATAGAAGTTATCCTGAAGAAGGGAAAACCAAAAGAGTTCATGCTAGTTTCACTC
GGAAATATGATCCTTCATATATTGAGTTTGGTTTTGTAGCTGTAATTGATGGTGAAGTACTAAAACCACA
GTGTATTATTTGTGGAGATGTACTGGCTAATGAAGCAATGAAACCATCAAAACTTAAGCGACATTTATAT
TCAAAACATAAAGAAATAAGTTCACAACCAAAAGAATTCTTTGAAAGAAAGAGTAGTGAATTGAAAAGCC
AACCAAAGCAGGTGTTCAACGTTTCTCATATAAACATTAGTGCTTTGCGGGCTTCATATAAAGTAGCACT
TCCGGTTGCCAAGTCTAAAACACCATACACAATTGCTGAGACACTAGTGAAAGACTGCATCAAAGAAGTT
TGCTTGGAAATGTTGGGTGAATCTGCAGCAAAGAAGGTAGCTCAGGTACCACTTTCCAATGACACCATAG
CTCGACGTATTCAGGAACTGGCTAATGATATGGAAGATCAACTCATAGAACAAATAAAACTAGCAAAGTA
TTTTTCATTGCAACTTGATGAATGCAGAGATATTGCTAACATGATAATTCTTTTAGTCTATGTGAGGTTT
GAACATGATGATGATATAAAGGAAGAGTTCTTTTTTTCAGCCTCTTTGCCTACAAACACAACTAGCTCAG
AACTGTATGAAGCTGTAAAGAATTATATTGTTAACAAATGTGGTTTGGAATTTAAATTTTGTGTAGGAGT
ATGTTCTGATGGTGCAGCTTCAATGACAGGAAAACATTCTGAAGTGGTAACCCAGATTAAGGAACTTGCG
CCAGAATGTAAAACAACACATTGCTTCATTCATCGAGAAAGTCTTGCCATGAAAAAAATATCAGCTGAAC
TAAATAGTGTACTTAATGATATAGTAAAAATTGTGAATTATATAAAATCTAATTCATTGAATTCAAGATT
ATTCTCTTTATTATGTGATAATATGGAAGCTGATCATAAGCAACTGTTACTGCATGCTGAGATACGGTGG
TTATCACGGGGAAAAGTTCTGTCAAGAATGTTTGAAATACGAAATGAACTCTTAGTGTTTCTGCAAGGCA
AGAAACCCATGTGGTCCCAACTTTTTAAAGATGTGAATTGGACAGCCAGACTTGCTTATTTGTCTGATAT
CTTCAGTATTTTTAATGATCTTAATGCTTCTATGCAAGGGAAGAATGCAACTTATTTTTCAATGGCAGAT
AAAGTTGAAGGACAAAAACAGAAGTTAGAAGCTTGGAAAAACAGAATTTCTACAGATTGTTATGACATGT
TTCATAATTTAACAACAATTATCAATGAAGTAGGTAATGATCTTGATATTGCACATCTGCGAAAAGTTAT
CAGTGAACATCTTACAAATTTGTTAGAATGTTTTGAATTTTATTTTCCATCAAAAGAAGATCCACGCATA
GGAAATTTGTGGATCCAAAATCCATTTCTTTCATCAAAAGATAACTTAAATTTAACTGTAACTCTACAGG
ATAAGTTGTTGAAGCTGGCTACCGACGAAGGATTGAAAATCAGTTTTGAAAATACAGCATCACTTCCTTC
ATTTTGGATAAAAGCTAAAAATGACTATCCTGAGCTTGCTGAGATTGCTTTAAAATTGCTGCTTCTTTTC
CCCTCAACATACCTCTGTGAGACCGGATTCTCTACTTTAAGTGTTATTAAAACAAAACATAGAAACAGTT
TAAATATACATTATCCCCTGAGGGTAGCATTGTCATCAATCCAACCTAGATTAGACAAATTAACAAGCAA
GAAGCAAGCTCACTTATCACATTAA

Translation (1174 aa):
MEEMIPLDSAKESLGTQLQSMEDRMECESPEPHPLQDNGSFLWFSMMSQSMGGDNLSSLDTNEAEIEPEN
MREKFFRSLARLLENKSNNTKIFSKAKYCQLIKEVKEAKAKAKKESVDYRRLARFDVILVQGNEKLIEAV
NGETDKIRYYLHSEDLFDILHNTHLSIGHGGRTRMEKELQAKYKNITKEVIMLYLTLCKPCQQKNSKLKK
VLTSKSIKEVSSRCQVDLIDMQLNPDGEYRFILHYQDLCTKLTFLRSLKSKRPTEVAHALLDIFTIIGAP
SVLQSDNGREFSSQVVSELSNIWPELKIVHGKSQTCQSQSSAEQTEDIRKRIFSWMQTNNSSHWTEFLWF
IQMSQNQPYHRSMQQTPCESAFSSEAKLGLSHSQLTEELVASLHTENELDQADKELENTLRAQYEENIET
GTDSSDIEENLSVTPKVAEKSPPESRLRFLSCVVCEKECTGVNSCISCDGNIHAICGVPSQHGTEGCGRQ
ITCSLCYETSTMKRKHDEIQRSLPVKPSKMLKPSGTPFSPDKVGDWMAKQASLDFFVKKRHAFSEHSSSN
KRNVNNRSYPEEGKTKRVHASFTRKYDPSYIEFGFVAVIDGEVLKPQCIICGDVLANEAMKPSKLKRHLY
SKHKEISSQPKEFFERKSSELKSQPKQVFNVSHINISALRASYKVALPVAKSKTPYTIAETLVKDCIKEV
CLEMLGESAAKKVAQVPLSNDTIARRIQELANDMEDQLIEQIKLAKYFSLQLDECRDIANMIILLVYVRF
EHDDDIKEEFFFSASLPTNTTSSELYEAVKNYIVNKCGLEFKFCVGVCSDGAASMTGKHSEVVTQIKELA
PECKTTHCFIHRESLAMKKISAELNSVLNDIVKIVNYIKSNSLNSRLFSLLCDNMEADHKQLLLHAEIRW
LSRGKVLSRMFEIRNELLVFLQGKKPMWSQLFKDVNWTARLAYLSDIFSIFNDLNASMQGKNATYFSMAD
KVEGQKQKLEAWKNRISTDCYDMFHNLTTIINEVGNDLDIAHLRKVISEHLTNLLECFEFYFPSKEDPRI
GNLWIQNPFLSSKDNLNLTVTLQDKLLKLATDEGLKISFENTASLPSFWIKAKNDYPELAEIALKLLLLF
PSTYLCETGFSTLSVIKTKHRNSLNIHYPLRVALSSIQPRLDKLTSKKQAHLSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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