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Report for CCDS86936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86936.1 Public Homo sapiens 20 SMIM26 24 110 108 CCDS HistoryNCBI Gene:388789Re-query CCDS DB by CCDS ID:86936.1Re-query CCDS DB by GeneID:388789See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86936.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000411646.2 ENSP00000485316.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000411646.2Link to Ensembl Protein Viewer:ENSP00000485316.2Re-query CCDS DB by Nucleotide ID:ENST00000411646Re-query CCDS DB by Protein ID:ENSP00000485316
Original member Current member NCBI NM_001348957.2 NP_001335886.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001348957.2Link to Protein Sequence:NP_001335886.1Re-query CCDS DB by Nucleotide ID:NM_001348957Re-query CCDS DB by Protein ID:NP_001335886Link to BLAST:NP_001335886.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335886.1 95 A0A096LP01-1 95 100% 0 0

Chromosomal Locations for CCDS 86936.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 18567479 18567596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18569236 18569405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (288 nt):
ATGTATCGAAATGAGTTCACGGCCTGGTACCGGCGGATGTCGGTGGTCTACGGGATCGGCACCTGGTCTG
TGTTGGGCTCACTGCTTTACTATAGCCGGACAATGGCGAAGTCGTCAGTAGACCAAAAGGATGGCTCAGC
AAGTGAAGTACCCAGTGAACTCTCTGAACGCCCAAAAGGATTTTATGTGGAAACAGTTGTCACATATAAA
GAAGATTTTGTTCCAAATACAGAAAAGATCCTCAACTATTGGAAATCATGGACTGGTGGCCCTGGTACAG
AACCATGA

Translation (95 aa):
MYRNEFTAWYRRMSVVYGIGTWSVLGSLLYYSRTMAKSSVDQKDGSASEVPSELSERPKGFYVETVVTYK
EDFVPNTEKILNYWKSWTGGPGTEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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