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Report for CCDS74828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74828.1 Public Homo sapiens 22 SLC2A11 24 110 108 CCDS HistoryNCBI Gene:66035Re-query CCDS DB by CCDS ID:74828.1Re-query CCDS DB by GeneID:66035See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 74828.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611880.4 ENSP00000483038.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611880.4Link to Ensembl Protein Viewer:ENSP00000483038.1Re-query CCDS DB by Nucleotide ID:ENST00000611880Re-query CCDS DB by Protein ID:ENSP00000483038
Original member Current member NCBI NM_001282864.2 NP_001269793.1 Accepted alive Link to Nucleotide Sequence:NM_001282864.2Link to Protein Sequence:NP_001269793.1Re-query CCDS DB by Nucleotide ID:NM_001282864Re-query CCDS DB by Protein ID:NP_001269793Link to BLAST:NP_001269793.1

Chromosomal Locations for CCDS 74828.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 23857490 23857531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23862104 23862202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23868481 23868641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23875117 23875241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23877042 23877171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23877721 23877869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23882459 23882646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23882759 23882869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23883874 23884024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23884302 23884429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23884623 23884946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGGAGGATGAACTGGAGCCGTCCTTACGGCCTCGGACGCAGATTCAGGGCAGGATCCTGCTCCTGACCA
TCTGCGCTGCCGGCATTGGTGGGACTTTTCAGTTTGGCTATAACCTCTCTATCATCAATGCCCCGACCTT
GCACATTCAGGAATTCACCAATGAGACATGGCAGGCGCGTACTGGAGAGCCACTGCCCGATCACCTAGTC
CTGCTTATGTGGTCCCTCATCGTGTCTCTGTATCCCCTGGGAGGCCTCTTTGGAGCACTGCTTGCAGGTC
CCTTGGCCATCACGCTGGGAAGGAAGAAGTCCCTCCTGGTGAATAACATCTTTGTGGTGTCAGCAGCAAT
CCTGTTTGGATTCAGCCGCAAAGCAGGCTCCTTTGAGATGATCATGCTGGGAAGACTGCTCGTGGGAGTC
AATGCAGGTGTGAGCATGAACATCCAGCCCATGTACCTGGGGGAGAGCGCCCCTAAGGAGCTCCGAGGAG
CTGTGGCCATGAGCTCAGCCATCTTTACGGCTCTGGGGATCGTGATGGGACAGGTGGTCGGACTCAGGGA
GCTCCTAGGTGGCCCTCAGGCCTGGCCCCTGCTGCTGGCCAGCTGCCTGGTGCCCGGGGCGCTCCAGCTC
GCCTCCCTGCCTCTGCTCCCTGAAAGCCCGCGCTACCTCCTCATTGACTGTGGAGACACCGAGGCCTGCC
TGGCAGCACTACGGCGGCTCCGGGGCTCCGGGGACTTGGCAGGGGAGCTGGAGGAGCTGGAGGAGGAGCG
CGCTGCCTGCCAGGGCTGCCGTGCCCGGCGCCCATGGGAGCTGTTCCAGCATCGGGCCCTGAGGAGACAG
GTGACAAGCCTCGTGGTTCTGGGCAGTGCCATGGAGCTCTGCGGGAATGACTCGGTGTACGCCTACGCCT
CCTCCGTGTTCCGGAAGGCAGGAGTGCCGGAAGCGAAGATCCAGTACGCGATCATCGGGACTGGGAGCTG
CGAGCTGCTCACGGCGGTTGTTAGTGTAGCTGGGGTGGATGAGGGCTGGGGGGTCCAGGCCGGGCTGACT
TCCACCTCACCCCCGCCCCGTCCACGGCAGAGCTCCTTCCCCTGGACACTCTACCTGGCCATGGCCTGCA
TCTTTGCCTTCATCCTCAGCTTTGGCATTGGCCCTGCCGGAGTGACGGGGATCCTGGCCACAGAGCTGTT
TGACCAGATGGCCAGGCCTGCTGCCTGCATGGTCTGCGGGGCGCTCATGTGGATCATGCTCATCCTGGTC
GGCCTGGGATTTCCCTTTATCATGGTCTTGGGGTCTTTTTTAATCCGCAGGAGGCCTTGTCCCACTTCCT
CTATGTCCCTTTCCTTGGTGTCTGTGTCTGTGGGGCCATCTACACTGGCCTGTTCCTTCCTGAGACCAAA
GGCAAGACCTTCCAAGAGATCTCCAAGGAATTACACAGACTCAACTTCCCCAGGCGGGCCCAGGGCCCCA
CGTGGAGGAGCCTGGAGGTTATCCAGTCAACAGAACTCTAGTCCCAAAGGGGTGGCCAGAGCCAAAGCCA
GCTACTGTCCTGTCCTCTGCTTCCTGCCAGGGCCCTGGTCCTCACTCCCTCCTGCATTCCTCATTTAA

Translation (535 aa):
MEDELEPSLRPRTQIQGRILLLTICAAGIGGTFQFGYNLSIINAPTLHIQEFTNETWQARTGEPLPDHLV
LLMWSLIVSLYPLGGLFGALLAGPLAITLGRKKSLLVNNIFVVSAAILFGFSRKAGSFEMIMLGRLLVGV
NAGVSMNIQPMYLGESAPKELRGAVAMSSAIFTALGIVMGQVVGLRELLGGPQAWPLLLASCLVPGALQL
ASLPLLPESPRYLLIDCGDTEACLAALRRLRGSGDLAGELEELEEERAACQGCRARRPWELFQHRALRRQ
VTSLVVLGSAMELCGNDSVYAYASSVFRKAGVPEAKIQYAIIGTGSCELLTAVVSVAGVDEGWGVQAGLT
STSPPPRPRQSSFPWTLYLAMACIFAFILSFGIGPAGVTGILATELFDQMARPAACMVCGALMWIMLILV
GLGFPFIMVLGSFLIRRRPCPTSSMSLSLVSVSVGPSTLACSFLRPKARPSKRSPRNYTDSTSPGGPRAP
RGGAWRLSSQQNSSPKGVARAKASYCPVLCFLPGPWSSLPPAFLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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