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Report for CCDS4251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4251.1 Public Homo sapiens 5 PCDHB16 24 110 108 CCDS HistoryNCBI Gene:57717Re-query CCDS DB by CCDS ID:4251.1Re-query CCDS DB by GeneID:57717See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4251.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000609684.3 ENSP00000477314.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000609684.3Link to Ensembl Protein Viewer:ENSP00000477314.1Re-query CCDS DB by Nucleotide ID:ENST00000609684Re-query CCDS DB by Protein ID:ENSP00000477314
Original member Current member NCBI NM_020957.4 NP_066008.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020957.4Link to Protein Sequence:NP_066008.2Re-query CCDS DB by Nucleotide ID:NM_020957Re-query CCDS DB by Protein ID:NP_066008Link to BLAST:NP_066008.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066008.2 776 Q9NRJ7 776 100% 0 0

Chromosomal Locations for CCDS 4251.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141182560 141184890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2331 nt):
ATGGAGATTGGATGGATGCACAATCGGAGACAAAGGCAAGTCCTTGTTTTCTTTGTTTTGCTGAGCTTGT
CTGGGGCGGGCGCCGAGTTGGGGTCCTATTCCGTAGTGGAAGAAACGGAGAGAGGCTCTTTTGTGGCAAA
TCTAGGAAAAGACCTGGGGTTGGGGTTGACAGAGATGTCCACCCGCAAGGCCAGGATCATTTCCCAGGGG
AACAAACAGCATTTGCAGCTCAAGGCTCAAACTGGGGATTTGCTCATAAATGAGAAGCTAGATCGAGAGG
AGCTATGCGGTCCCACTGAGCCTTGCATACTACATTTCCAAGTGTTAATGGAAAACCCTTTAGAAATATT
TCAGGCTGAACTGAGGGTGATAGATATAAATGACCATTCTCCCATGTTCACTGAAAAGGAAATGATTCTA
AAAATACCGGAAAACAGTCCTCTAGGAACTGAGTTCCCTCTGAATCATGCTTTGGACTTGGACGTAGGAA
GCAATAATGTTCAAAACTATAAAATCAGCCCAAGCTCTCATTTCCGGGTTCTAATCCATGAATTCAGAGA
TGGCAGGAAATACCCTGAGCTAGTGTTGGATAAAGAGCTGGATCGGGAGGAGGAGCCTCAACTAAGATTA
ACCCTGACAGCGCTGGATGGTGGCTCTCCACCGCGATCTGGAACTGCTCAGGTCCGTATTGAAGTGGTGG
ACATCAATGATAACGCTCCTGAGTTTGAGCAGCCCATCTACAAAGTGCAGATTCCAGAGAACAGTCCTCT
TGGCTCCCTGGTTGCCACCGTCTCCGCCAGGGATTTAGACGGCGGAGCCAATGGAAAAATATCATACACA
CTCTTTCAGCCTTCGGAGGATATTAGTAAAACTTTGGAGGTAAATCCTATGACAGGGGAAGTTCGACTGA
GAAAGCAAGTAGATTTCGAAATGGTTACGTCTTATGAAGTGCGCATCAAAGCCACAGATGGGGGAGGTCT
TTCAGGAAAGTGCACTCTTCTCCTGCAGGTGGTGGACGTGAATGACAATCCCCCACAGGTGACCATGTCT
GCACTCACCAGCCCCATCCCAGAGAACTCGCCTGAGATAGTAGTTGCTGTTTTCAGCGTTTCAGATCCTG
ACTCCGGAAACAATGGGAAGACGATTTCCTCCATCCAGGAAGACCTTCCCTTTCTTCTAAAACCTTCAGT
CAAGAACTTTTACACCTTGGTAACGGAGAGAGCACTCGACAGAGAAGCAAGAGCTGAATATAATATCACC
CTCACCGTCACAGATATGGGGACTCCAAGGCTGAAAACGGAGCACAACATAACAGTGCAGATATCAGATG
TCAATGATAACGCCCCCACTTTCACCCAAACCTCCTACACCCTGTTCGTCCGCGAGAACAACAGCCCCGC
CCTGCACATCGGCAGCGTCAGCGCCACAGACAGAGACTCGGGCACCAACGCCCAGGTCACCTACTCGCTG
CTGCCGCCCCAAGACCCGCACCTGCCCCTCGCCTCCCTGGTCTCCATCAACGCGGACAACGGCCACCTGT
TCGCCCTCAGGTCGCTGGACTACGAGGCCCTGCAGGCTTTCGAGTTCCGCGTGGGCGCCACAGACCGCGG
CTCCCCCGCGCTGAGCAGAGAGGCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTC
GTGCTGTACCCGCTGCAGAACGGCTCCGCGCCCTGCACTGAGCTGGTGCCCCGGGCGGCCGAGCCGGGCT
ACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAATGCCTGGCTGTCGTACCAGCTGCT
CAAGGCCACGGAGCCCGGGCTGTTCGGTGTGTGGGCGCACAATGGCGAGGTGCGCACCGCCAGGCTGCTG
AGCGAGCGCGACGCAGCCAAGCAGAGGCTGGTGGTGCTGGTCAAGGACAATGGCGAGCCTCCGCGCTCGG
CCACCGCCACGCTGCACGTGCTCCTGGTGGACGGCTTCTCCCAGCCCTTCCTGCCGCTCCCAGAGGCGGC
CCCCGGCCAGACCCAGGCCAACTCGCTCACTGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCGTCGCTC
TTCCTCTTTTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTCGGTGGGCC
GCTGCTCGATGCCTGAGGGCCCCTTTCCAGGGCGTCTGGTGGACGTAAGCGGCACCGGGACCCTGTCCCA
GAGCTACCAATACGAGGTGTGTCTGACAGGAGGCTCAGAAACAAGTGAGTTCAAGTTCCTGAAGCCGATT
ATCCCCAACTTCTCTCCTTAG

Translation (776 aa):
MEIGWMHNRRQRQVLVFFVLLSLSGAGAELGSYSVVEETERGSFVANLGKDLGLGLTEMSTRKARIISQG
NKQHLQLKAQTGDLLINEKLDREELCGPTEPCILHFQVLMENPLEIFQAELRVIDINDHSPMFTEKEMIL
KIPENSPLGTEFPLNHALDLDVGSNNVQNYKISPSSHFRVLIHEFRDGRKYPELVLDKELDREEEPQLRL
TLTALDGGSPPRSGTAQVRIEVVDINDNAPEFEQPIYKVQIPENSPLGSLVATVSARDLDGGANGKISYT
LFQPSEDISKTLEVNPMTGEVRLRKQVDFEMVTSYEVRIKATDGGGLSGKCTLLLQVVDVNDNPPQVTMS
ALTSPIPENSPEIVVAVFSVSDPDSGNNGKTISSIQEDLPFLLKPSVKNFYTLVTERALDREARAEYNIT
LTVTDMGTPRLKTEHNITVQISDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSL
LPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSREALVRVLVLDANDNSPF
VLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL
SERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQPFLPLPEAAPGQTQANSLTVYLVVALASVSSL
FLFSVLLFVAVRLCRRSRAASVGRCSMPEGPFPGRLVDVSGTGTLSQSYQYEVCLTGGSETSEFKFLKPI
IPNFSP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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