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Report for CCDS58336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58336.1 Public Homo sapiens 14 ZNF839 24 110 108 CCDS HistoryNCBI Gene:55778Re-query CCDS DB by CCDS ID:58336.1Re-query CCDS DB by GeneID:55778See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58336.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000559185.5 ENSP00000453109.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000559185.5Link to Ensembl Protein Viewer:ENSP00000453109.1Re-query CCDS DB by Nucleotide ID:ENST00000559185Re-query CCDS DB by Protein ID:ENSP00000453109
Original member Current member EBI ENST00000558850.5 ENSP00000453363.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000558850.5Link to Ensembl Protein Viewer:ENSP00000453363.1Re-query CCDS DB by Nucleotide ID:ENST00000558850Re-query CCDS DB by Protein ID:ENSP00000453363
Original member Current member NCBI NM_001267827.2 NP_001254756.1 Accepted alive Link to Nucleotide Sequence:NM_001267827.2Link to Protein Sequence:NP_001254756.1Re-query CCDS DB by Nucleotide ID:NM_001267827Re-query CCDS DB by Protein ID:NP_001254756Link to BLAST:NP_001254756.1
Original member Current member NCBI NM_001267828.2 NP_001254757.1 Accepted alive Link to Nucleotide Sequence:NM_001267828.2Link to Protein Sequence:NP_001254757.1Re-query CCDS DB by Nucleotide ID:NM_001267828Re-query CCDS DB by Protein ID:NP_001254757Link to BLAST:NP_001254757.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254756.1 811 A8K0R7-1 811 100% 0 0
NP_001254757.1 811 A8K0R7-1 811 100% 0 0

Chromosomal Locations for CCDS 58336.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 102326045 102326887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 102331622 102331846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 102334554 102334646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 102335689 102335838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 102338816 102338953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 102339094 102339223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 102341323 102342179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2436 nt):
ATGCTCCTACCGACCACAATCCAGCCCCAAACTGCAAGAAAGAGCCAGCTGCCCCGGGGGAATTCCTGCC
TGGTGGGGCTCCATATCGCCAGCCCTCAGCTGCTCAGGGTACAGCCGCTTGTGAGAACCGAGCCACAGTC
CTGCTTCCTAAGTGACTTATGCCAACCTCCTGCTCAGGGGTTTGTACAGAGACCACTGCCAGCCCTCCAG
GTGGTCCCTGCAAAGAGAGTCCCAGCCCCCAAGGCTCCAGATGAACAGGGCTCCATGTTGACCCCTTTGT
CTGCCTCTGACCCGCTGGCAGTAACATCTCTTTCATCCAGTTCAGCACATCCATTTATTTCCAACTTGCA
TACAAGACATACTGAGAAACTAAAAAAATCGTTAAAAGTAAAGACACGTTCTGGACGGGTATCTCGACCT
CCCAAATATAAAGCTAAAGATTATAAGTTCATAAAAACAGAGGATCTGGCGGATGGTCATCTGTCAGATT
CTGATGATTACTCAGAACTCTGTGTGGAAGAAGATGAAGATCAGAGGGAGAGGCACGCACTCTTTGACTT
ATCGAGCTGCTCCCTGAGGCCCAAAAGCTTTAAGTGTCAGACTTGTGAAAAGTCATATATAGGGAAGGGG
GGACTGGCCCGACATTTTAAACTTAACCCAGGCCACGGCCAGTTGGACCCCGAGATGGTGCTGTCTGAGA
AAGCCAGTGGAAGCACCCTCCGGGGGTGCACGGAGGAAAGGACGCTCAGCCTGACCTCCCTGGGGCTGTC
CATGCCAGCGGATCCATGTGAGGGAGGGGCCCGCTCCTGCTTGGTGACAGAGTCAGCACGCGGTGGCCTG
CAGAATGGTCAGTCTGTAGACGTTGAAGAGACATTGCCATCTGAACCAGAAAATGGAGCTCTTTTGCGAT
CAGAGAGATACCAAGGACCTAGAAGACGCGCATGCTCAGAGACCCTTGCAGAGTCCCGCACAGCTGTCCT
CCAGCAGAGAAGAGCTGCTCAGCTACCTGGTGGCCCTGCTGCGGCAGGGGAGCAGAGGGCGTCGCCAAGC
AAAGCCAGGCTCAAGGAGTTCCTCCAGCAGTGTGACCGGGAGGATCTGGTGGAATTGGCTCTGCCTCAGC
TGGCTCAGGTTGTGACCGTGTATGAGTTTCTTCTGATGAAGGTTGAAAAAGATCATCTAGCAAAGCCTTT
TTTCCCAGCTATATATAAGGAATTTGAAGAGTTGCATAAAATGGTTAAGAAAATGTGCCAAGATTACCTC
AGTAGTTCTGGTCTGTGTTCCCAGGAGACCCTGGAAATAAACAATGATAAGGTTGCTGAGTCATTAGGAA
TCACAGAATTCCTACGGAAGAAAGAAATACACCCAGACAACCTTGGACCCAAGCACCTCAGCCGAGACAT
GGATGGGGAGCAGCTAGAGGGAGCTAGCAGCGAGAAGAGGGAACGTGAGGCTGCGGAGGAGGGACTGGCC
TCAGTGAAAAGGCCCAGAAGAGAAGCCCTGTCCAACGATACCACTGAATCTCTTGCTGCCAACAGCAGAG
GCCGGGAGAAGCCCAGGCCCTTGCATGCTTTGGCCGCTGGTTTTTCCCCTCCAGTAAATGTGACTGTCTC
TCCCCGTTCTGAAGAAAGCCATACAACGACGGTTTCTGGTGGCAATGGGAGCGTGTTCCAGGCGGGCCCG
CAGCTTCAGGCACTGGCTAACTTAGAAGCCAGGAGGGGGTCTATAGGTGCTGCTCTCTCATCCCGGGATG
TCAGTGGGCTGCCTGTTTATGCTCAGTCAGGAGAGCCTAGGAGGCTGACCCAGGCACAGGTGGCAGCGTT
TCCTGGAGAGAATGCTTTGGAACACTCTTCAGACCAGGACACCTGGGACAGCCTGAGGAGCCCGGGTTTC
TGCAGCCCTTTGTCATCTGGTGGTGGAGCAGAGTCCCTGCCGCCTGGGGGGCCTGGACATGCAGAGGCAG
GACACCTCGGCAAGGTTTGTGACTTCCACCTGAACCACCAGCAGCCCAGCCCCACCAGCGTCCTGCCTAC
AGAGGTGGCAGCCCCTCCGCTTGAGAAAATTTTGTCTGTGGATAGCGTGGCAGTGGACTGTGCCTACAGG
ACTGTGCCCAAGCCAGGGCCTCAGCCTGGCCCACATGGATCACTATTGACTGAAGGGTGTCTCAGAAGCC
TTTCGGGGGACTTGAACCGGTTCCCCTGTGGGATGGAGGTGCACTCTGGCCAGAGAGAACTGGAGAGCGT
GGTTGCTGTCGGCGAAGCCATGGCTTTTGAAATTTCCAATGGGAGCCATGAGTTACTGTCTCAGGGACAG
AAGCAGATTTTTATTCAGACTTCCGATGGGCTTATCTTGTCCCCTCCAGGTACAATAGTGTCTCAGGAGG
AGGACATTGTCACAGTGACTGATGCAGAGGGGCGTGCCTGCGGATGGGCCCGCTAG

Translation (811 aa):
MLLPTTIQPQTARKSQLPRGNSCLVGLHIASPQLLRVQPLVRTEPQSCFLSDLCQPPAQGFVQRPLPALQ
VVPAKRVPAPKAPDEQGSMLTPLSASDPLAVTSLSSSSAHPFISNLHTRHTEKLKKSLKVKTRSGRVSRP
PKYKAKDYKFIKTEDLADGHLSDSDDYSELCVEEDEDQRERHALFDLSSCSLRPKSFKCQTCEKSYIGKG
GLARHFKLNPGHGQLDPEMVLSEKASGSTLRGCTEERTLSLTSLGLSMPADPCEGGARSCLVTESARGGL
QNGQSVDVEETLPSEPENGALLRSERYQGPRRRACSETLAESRTAVLQQRRAAQLPGGPAAAGEQRASPS
KARLKEFLQQCDREDLVELALPQLAQVVTVYEFLLMKVEKDHLAKPFFPAIYKEFEELHKMVKKMCQDYL
SSSGLCSQETLEINNDKVAESLGITEFLRKKEIHPDNLGPKHLSRDMDGEQLEGASSEKREREAAEEGLA
SVKRPRREALSNDTTESLAANSRGREKPRPLHALAAGFSPPVNVTVSPRSEESHTTTVSGGNGSVFQAGP
QLQALANLEARRGSIGAALSSRDVSGLPVYAQSGEPRRLTQAQVAAFPGENALEHSSDQDTWDSLRSPGF
CSPLSSGGGAESLPPGGPGHAEAGHLGKVCDFHLNHQQPSPTSVLPTEVAAPPLEKILSVDSVAVDCAYR
TVPKPGPQPGPHGSLLTEGCLRSLSGDLNRFPCGMEVHSGQRELESVVAVGEAMAFEISNGSHELLSQGQ
KQIFIQTSDGLILSPPGTIVSQEEDIVTVTDAEGRACGWAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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