NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9903.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9903.2 Public Homo sapiens 14 SLC24A4 24 110 108 CCDS HistoryNCBI Gene:123041Re-query CCDS DB by CCDS ID:9903.2Re-query CCDS DB by GeneID:123041See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 9903.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9903.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000532405.6 ENSP00000431840.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000532405.6Link to Ensembl Protein Viewer:ENSP00000431840.1Re-query CCDS DB by Nucleotide ID:ENST00000532405Re-query CCDS DB by Protein ID:ENSP00000431840
Original member Current member EBI ENST00000676001.1 ENSP00000502715.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676001.1Link to Ensembl Protein Viewer:ENSP00000502715.1Re-query CCDS DB by Nucleotide ID:ENST00000676001Re-query CCDS DB by Protein ID:ENSP00000502715
Original member Current member NCBI NM_001378620.1 NP_001365549.1 Accepted alive Link to Nucleotide Sequence:NM_001378620.1Link to Protein Sequence:NP_001365549.1Re-query CCDS DB by Nucleotide ID:NM_001378620Re-query CCDS DB by Protein ID:NP_001365549Link to BLAST:NP_001365549.1
Original member Current member NCBI NM_153646.4 NP_705932.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153646.4Link to Protein Sequence:NP_705932.2Re-query CCDS DB by Nucleotide ID:NM_153646Re-query CCDS DB by Protein ID:NP_705932Link to BLAST:NP_705932.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001365549.1 622 Q8NFF2-1 622 100% 0 0
NP_705932.2 622 Q8NFF2-1 622 100% 0 0

Chromosomal Locations for CCDS 9903.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 92323831 92323960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92325868 92325978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92433912 92433988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92439335 92439409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92442089 92442173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92442713 92442816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92443400 92443474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92445317 92445342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92447371 92447424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92449074 92449216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92453900 92454069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92456404 92456608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92482680 92482846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92486666 92486780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92491665 92491777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92492175 92492240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92493476 92493628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGCGCTCCGCGGGACCCTCCGGCCGCTCAAAGTTCGCAGGAGGCGAGAGATGCTGCCGCAGCAAGTCG
GCTTCGTGTGCGCGGTGCTGGCCCTGGTGTGCTGTGCGTCCGGCCTCTTCGGCAGCTTGGGGCACAAAAC
AGCTTCTGCTAGCAAACGTGTCCTGCCAGACACGTGGAGAAATAGAAAGTTGATGGCCCCAGTGAATGGG
ACACAGACAGCCAAGAACTGCACAGATCCTGCGATTCACGAGTTCCCCACAGATCTGTTCTCCAATAAGG
AGCGACAGCACGGAGCCGTCCTGCTGCACATCCTTGGTGCTCTGTATATGTTCTATGCCTTGGCCATAGT
GTGCGATGACTTCTTTGTTCCGTCTCTAGAGAAGATCTGTGAGAGACTCCATCTGAGCGAAGATGTGGCT
GGAGCCACCTTCATGGCTGCAGGAAGCTCAACGCCAGAGCTGTTTGCGTCTGTTATTGGGGTGTTCATCA
CCCATGGGGACGTCGGGGTGGGCACCATCGTGGGCTCTGCTGTGTTCAACATCCTGTGCATAATTGGAGT
GTGCGGACTGTTTGCTGGCCAGGTGGTCCGTCTGACGTGGTGGGCCGTGTGCCGAGACTCCGTGTACTAC
ACCATCTCTGTCATCGTGCTCATCGTGTTCATATATGATGAACAAATTGTGTGGTGGGAAGGCCTGGTGC
TCATCATCTTGTATGTGTTTTATATTCTGATCATGAAGTACAATGTGAAGATGCAAGCCTTTTTCACAGT
CAAACAAAAGAGCATTGCAAACGGTAACCCGGTCAACAGTGAGCTGGAGGCTGGTAATGATTTCTATGAC
GGTAGCTATGATGACCCTTCCGTGCCATTGCTGGGGCAAGTGAAGGAGAAGCCACAGTATGGCAAGAACC
CCGTGGTGATGGTGGACGAGATTATGAGCTCCAGCCCTCCCAAGTTCACCTTCCCTGAAGCAGGCTTACG
AATCATGATCACCAATAAGTTTGGACCCAGGACCCGACTACGGATGGCCAGCAGGATCATCATTAATGAG
CGGCAGAGACTGATCAACTCGGCCAATGGTGTGAGCAGTAAGCCGCTTCAAAACGGGAGGCACGAGAACA
TTGAGAACGGGAATGTTCCTGTGGAAAACCCCGAAGACCCTCAGCAGAATCAGGAGCAGCAGCCGCCGCC
ACAGCCACCACCGCCAGAGCCAGAGCCGGTGGAGGCTGACTTCCTGTCCCCCTTCTCCGTGCCGGAGGCC
AGAGGGGACAAGGTCAAGTGGGTGTTCACCTGGCCCCTCATCTTCCTCCTGTGCGTCACCATTCCCAACT
GCAGCAAGCCCCGCTGGGAGAAGTTCTTCATGGTCACCTTCATCACCGCCACGCTGTGGATCGCTGTGTT
CTCCTACATCATGGTGTGGCTGGTGACTATTATCGGATACACACTTGGGATCCCGGATGTCATCATGGGC
ATTACTTTCCTGGCAGCAGGGACAAGTGTTCCAGACTGCATGGCCAGCCTAATTGTGGCGAGACAAGGCC
TTGGGGACATGGCAGTCTCCAACACCATAGGAAGCAACGTGTTTGACATCCTGGTAGGACTTGGTGTACC
GTGGGGCCTGCAGACCATGGTTGTTAATTATGGATCAACAGTGAAGATCAACAGCCGGGGGCTGGTCTAT
TCCGTGGTCCTGTTGCTGGGCTCTGTCGCTCTCACCGTCCTCGGCATCCACCTAAACAAGTGGCGACTGG
ACCGGAAGCTGGGTGTCTACGTGCTGGTTCTCTACGCCATCTTCTTGTGCTTCTCCATAATGATAGAGTT
TAACGTCTTTACCTTCGTCAACTTGCCGATGTGCCGGGAAGACGATTAG

Translation (622 aa):
MALRGTLRPLKVRRRREMLPQQVGFVCAVLALVCCASGLFGSLGHKTASASKRVLPDTWRNRKLMAPVNG
TQTAKNCTDPAIHEFPTDLFSNKERQHGAVLLHILGALYMFYALAIVCDDFFVPSLEKICERLHLSEDVA
GATFMAAGSSTPELFASVIGVFITHGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVRLTWWAVCRDSVYY
TISVIVLIVFIYDEQIVWWEGLVLIILYVFYILIMKYNVKMQAFFTVKQKSIANGNPVNSELEAGNDFYD
GSYDDPSVPLLGQVKEKPQYGKNPVVMVDEIMSSSPPKFTFPEAGLRIMITNKFGPRTRLRMASRIIINE
RQRLINSANGVSSKPLQNGRHENIENGNVPVENPEDPQQNQEQQPPPQPPPPEPEPVEADFLSPFSVPEA
RGDKVKWVFTWPLIFLLCVTIPNCSKPRWEKFFMVTFITATLWIAVFSYIMVWLVTIIGYTLGIPDVIMG
ITFLAAGTSVPDCMASLIVARQGLGDMAVSNTIGSNVFDILVGLGVPWGLQTMVVNYGSTVKINSRGLVY
SVVLLLGSVALTVLGIHLNKWRLDRKLGVYVLVLYAIFLCFSIMIEFNVFTFVNLPMCREDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH