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Report for CCDS47345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47345.1 Public Homo sapiens 5 EIF4E1B 24 110 108 CCDS HistoryNCBI Gene:253314Re-query CCDS DB by CCDS ID:47345.1Re-query CCDS DB by GeneID:253314See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47345.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318682.11 ENSP00000323714.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000318682.11Link to Ensembl Protein Viewer:ENSP00000323714.6Re-query CCDS DB by Nucleotide ID:ENST00000318682Re-query CCDS DB by Protein ID:ENSP00000323714
Original member Current member EBI ENST00000504597.5 ENSP00000427633.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000504597.5Link to Ensembl Protein Viewer:ENSP00000427633.1Re-query CCDS DB by Nucleotide ID:ENST00000504597Re-query CCDS DB by Protein ID:ENSP00000427633
Original member Current member EBI ENST00000647833.1 ENSP00000497422.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647833.1Link to Ensembl Protein Viewer:ENSP00000497422.1Re-query CCDS DB by Nucleotide ID:ENST00000647833Re-query CCDS DB by Protein ID:ENSP00000497422
Original member Current member NCBI NM_001099408.2 NP_001092878.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099408.2Link to Protein Sequence:NP_001092878.1Re-query CCDS DB by Nucleotide ID:NM_001099408Re-query CCDS DB by Protein ID:NP_001092878Link to BLAST:NP_001092878.1
Original member Current member NCBI NM_001375362.1 NP_001362291.1 Accepted alive Link to Nucleotide Sequence:NM_001375362.1Link to Protein Sequence:NP_001362291.1Re-query CCDS DB by Nucleotide ID:NM_001375362Re-query CCDS DB by Protein ID:NP_001362291Link to BLAST:NP_001362291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092878.1 242 A6NMX2 242 100% 0 0
NP_001362291.1 242 A6NMX2 242 100% 0 0

Chromosomal Locations for CCDS 47345.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176642788 176642802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176643082 176643266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176643639 176643734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176644376 176644439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176645130 176645243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176645377 176645516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176645866 176645980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGCTTGCTGTTGAGGTGAGTGAAGCTGAGGGTGGAATCCGAGAGTGGGAGGAGGAGGAGAAGGAGGAGG
AGGCAGCAGAGAGGACGCCCACAGGAGAAAAGTCTCCAAACTCTCCCAGGACTTTGCTGTCTCTGAGAGG
GAAGGCCCGGACGGGGGGCCCCATGGAAGTCAAGCTGGAGCTGCACCCCTTGCAGAACAGGTGGGCTCTG
TGGTTCTTCAAGAATGACCGCAGCCGGGCCTGGCAGGACAACCTGCACCTGGTCACCAAGGTGGACACTG
TGGAGGACTTCTGGGCGCTATACAGTCACATCCAGCTGGCCAGCAAGCTCTCCTCTGGCTGTGACTACGC
CCTCTTCAAGGATGGCATCCAGCCCATGTGGGAGGACAGCAGGAATAAACGGGGTGGCCGCTGGCTGGTC
AGCCTGGCCAAGCAGCAGCGCCACATTGAGCTGGACCGGCTGTGGCTGGAGACGCTGCTGTGTCTGATCG
GGGAGAGCTTTGAGGAACACAGCAGAGAGGTATGTGGGGCCGTCGTCAACATCCGCACCAAGGGGGACAA
GATCGCTGTGTGGACGAGGGAGGCGGAAAACCAGGCGGGCGTGCTGCACGTTGGGCGTGTATACAAAGAG
CGCCTGGGCCTCTCCCCAAAGACCATCATTGGGTACCAGGCCCATGCAGACACAGCCACCAAGAGCAACT
CCCTAGCCAAGAACAAGTTTGTGGTGTGA

Translation (242 aa):
MLAVEVSEAEGGIREWEEEEKEEEAAERTPTGEKSPNSPRTLLSLRGKARTGGPMEVKLELHPLQNRWAL
WFFKNDRSRAWQDNLHLVTKVDTVEDFWALYSHIQLASKLSSGCDYALFKDGIQPMWEDSRNKRGGRWLV
SLAKQQRHIELDRLWLETLLCLIGESFEEHSREVCGAVVNIRTKGDKIAVWTREAENQAGVLHVGRVYKE
RLGLSPKTIIGYQAHADTATKSNSLAKNKFVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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