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Report for CCDS173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
173.1 Public Homo sapiens 1 NECAP2 24 110 108 CCDS HistoryNCBI Gene:55707Re-query CCDS DB by CCDS ID:173.1Re-query CCDS DB by GeneID:55707See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 173.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337132.10 ENSP00000338746.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337132.10Link to Ensembl Protein Viewer:ENSP00000338746.5Re-query CCDS DB by Nucleotide ID:ENST00000337132Re-query CCDS DB by Protein ID:ENSP00000338746
Original member Current member EBI ENST00000492095.5 ENSP00000427620.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000492095.5Link to Ensembl Protein Viewer:ENSP00000427620.1Re-query CCDS DB by Nucleotide ID:ENST00000492095Re-query CCDS DB by Protein ID:ENSP00000427620
Original member Current member NCBI NM_018090.5 NP_060560.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018090.5Link to Protein Sequence:NP_060560.1Re-query CCDS DB by Nucleotide ID:NM_018090Re-query CCDS DB by Protein ID:NP_060560Link to BLAST:NP_060560.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060560.1 263 Q9NVZ3-1 263 100% 0 0

Chromosomal Locations for CCDS 173.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16440762 16440853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16443632 16443732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16447870 16447974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16448060 16448141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16449093 16449201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16451838 16452015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16455818 16455893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16458842 16458890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGGAGGAGAGCGGGTACGAGTCGGTGCTCTGTGTCAAGCCTGACGTCCACGTCTACCGCATCCCTCCGC
GGGCTACCAACCGTGGCTACAGGGCTGCGGAGTGGCAGCTGGACCAGCCATCATGGAGTGGCCGGCTGAG
GATCACTGCAAAGGGACAGATGGCCTACATCAAGCTGGAGGACAGGACGTCAGGGGAGCTCTTTGCTCAG
GCCCCGGTGGATCAGTTTCCTGGCACAGCTGTGGAGAGTGTGACGGATTCCAGCAGGTACTTCGTGATCC
GCATCGAAGATGGAAATGGGCGACGGGCGTTTATTGGAATTGGCTTCGGGGACCGAGGTGATGCCTTTGA
CTTCAATGTTGCATTGCAGGACCATTTCAAGTGGGTGAAACAGCAGTGTGAATTTGCAAAACAAGCCCAG
AACCCAGACCAAGGCCCTAAACTGGACCTGGGCTTCAAGGAGGGCCAGACCATCAAGCTCAACATCGCAA
ACATGAAGAAGAAGGAAGGAGCAGCTGGGAATCCCCGAGTCCGGCCTGCCAGCACAGGAGGGCTGAGCCT
GCTTCCCCCTCCCCCAGGGGGGAAAACCTCCACCCTGATCCCTCCCCCTGGGGAGCAGTTGGCTGTGGGG
GGATCCCTCGTCCAGCCAGCAGTTGCTCCCAGTTCAGGAGGTGCTCCTGTACCCTGGCCACAGCCCAATC
CTGCCACTGCTGACATCTGGGGAGACTTTACCAAATCTACAGGATCAACTTCCAGCCAGACCCAGCCAGG
CACAGGCTGGGTCCAGTTCTGA

Translation (263 aa):
MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQ
APVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQ
NPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVG
GSLVQPAVAPSSGGAPVPWPQPNPATADIWGDFTKSTGSTSSQTQPGTGWVQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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