NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3944.1 Public Homo sapiens 5 CCL28 24 110 108 CCDS HistoryNCBI Gene:56477Re-query CCDS DB by CCDS ID:3944.1Re-query CCDS DB by GeneID:56477See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 3944.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361115.4 ENSP00000354416.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361115.4Link to Ensembl Protein Viewer:ENSP00000354416.4Re-query CCDS DB by Nucleotide ID:ENST00000361115Re-query CCDS DB by Protein ID:ENSP00000354416
Original member Current member EBI ENST00000489442.5 ENSP00000426424.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000489442.5Link to Ensembl Protein Viewer:ENSP00000426424.1Re-query CCDS DB by Nucleotide ID:ENST00000489442Re-query CCDS DB by Protein ID:ENSP00000426424
Original member Current member NCBI NM_001301873.2 NP_001288802.1 Accepted alive Link to Nucleotide Sequence:NM_001301873.2Link to Protein Sequence:NP_001288802.1Re-query CCDS DB by Nucleotide ID:NM_001301873Re-query CCDS DB by Protein ID:NP_001288802Link to BLAST:NP_001288802.1
Original member Current member NCBI NM_001301874.2 NP_001288803.1 Accepted alive Link to Nucleotide Sequence:NM_001301874.2Link to Protein Sequence:NP_001288803.1Re-query CCDS DB by Nucleotide ID:NM_001301874Re-query CCDS DB by Protein ID:NP_001288803Link to BLAST:NP_001288803.1
Original member Current member NCBI NM_148672.3 NP_683513.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_148672.3Link to Protein Sequence:NP_683513.1Re-query CCDS DB by Nucleotide ID:NM_148672Re-query CCDS DB by Protein ID:NP_683513Link to BLAST:NP_683513.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288802.1 127 Q9NRJ3-1 127 100% 0 0
NP_001288803.1 127 Q9NRJ3-1 127 100% 0 0
NP_683513.1 127 Q9NRJ3-1 127 100% 0 0

Chromosomal Locations for CCDS 3944.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 43381860 43382052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43388350 43388476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43412253 43412316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGCAGCAGAGAGGACTCGCCATCGTGGCCTTGGCTGTCTGTGCGGCCCTACATGCCTCAGAAGCCATAC
TTCCCATTGCCTCCAGCTGTTGCACGGAGGTTTCACATCATATTTCCAGAAGGCTCCTGGAAAGAGTGAA
TATGTGTCGCATCCAGAGAGCTGATGGGGATTGTGACTTGGCTGCTGTCATCCTTCATGTCAAGCGCAGA
AGAATCTGTGTCAGCCCGCACAACCATACTGTTAAGCAGTGGATGAAAGTGCAAGCTGCCAAGAAAAATG
GTAAAGGAAATGTTTGCCACAGGAAGAAACACCATGGCAAGAGGAACAGTAACAGGGCACATCAGGGGAA
ACACGAAACATACGGCCATAAAACTCCTTATTAG

Translation (127 aa):
MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDLAAVILHVKRR
RICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHETYGHKTPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH