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Report for CCDS78057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78057.1 Public Homo sapiens 5 LYRM7 24 110 108 CCDS HistoryNCBI Gene:90624Re-query CCDS DB by CCDS ID:78057.1Re-query CCDS DB by GeneID:90624See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78057.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000507584.1 ENSP00000423991.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507584.1Link to Ensembl Protein Viewer:ENSP00000423991.1Re-query CCDS DB by Nucleotide ID:ENST00000507584Re-query CCDS DB by Protein ID:ENSP00000423991
Original member Current member NCBI NM_001293735.2 NP_001280664.1 Accepted alive Link to Nucleotide Sequence:NM_001293735.2Link to Protein Sequence:NP_001280664.1Re-query CCDS DB by Nucleotide ID:NM_001293735Re-query CCDS DB by Protein ID:NP_001280664Link to BLAST:NP_001280664.1

Chromosomal Locations for CCDS 78057.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 131171021 131171038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131180095 131180167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131182229 131182299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131199531 131199560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (192 nt):
ATGGGACGGGCAGTCAAGGTTTTACAGCTCTTTAAAACACTGCACAGGACCAGACAACAAGTTTTTAAAA
ATGATGCCAGAGCATTAGAAGCAGCCAGAATAAAGATAAATGAAGAATTCAAAAATAATAAAAGTGAAAC
TTCTTCTAAGAAAATAGAAGAGAACTGGTCCCTAGGAAAGACCTTCTTGTAG

Translation (63 aa):
MGRAVKVLQLFKTLHRTRQQVFKNDARALEAARIKINEEFKNNKSETSSKKIEENWSLGKTFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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