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Report for CCDS58843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58843.1 Public Homo sapiens 3 NECTIN3 24 110 108 CCDS HistoryNCBI Gene:25945Re-query CCDS DB by CCDS ID:58843.1Re-query CCDS DB by GeneID:25945See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58843.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000493615.5 ENSP00000420579.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000493615.5Link to Ensembl Protein Viewer:ENSP00000420579.1Re-query CCDS DB by Nucleotide ID:ENST00000493615Re-query CCDS DB by Protein ID:ENSP00000420579
Original member Current member NCBI NM_001243288.2 NP_001230217.1 Accepted alive Link to Nucleotide Sequence:NM_001243288.2Link to Protein Sequence:NP_001230217.1Re-query CCDS DB by Nucleotide ID:NM_001243288Re-query CCDS DB by Protein ID:NP_001230217Link to BLAST:NP_001230217.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230217.1 487 Q9NQS3-3 487 100% 0 0

Chromosomal Locations for CCDS 58843.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 111072420 111072510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111112030 111112371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111118656 111118952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111122121 111122238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111126184 111126335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111144899 111145037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111147403 111147484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111192351 111192413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111193200 111193379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGGCCGAGGGTTGGCGATGGTGCTTCGTGCGCCGAACTCCGGGTTTGCTCCGGGGACCGTTACTTCCTC
GCTCATTCTCTGGGAACCCTCGTGCCTTAGCTGGACCAATTATTGTGGAGCCACATGTCACAGCAGTATG
GGGAAAGAATGTTTCATTAAAGTGTTTAATTGAAGTAAATGAAACCATAACACAGATTTCATGGGAGAAG
ATACATGGCAAAAGTTCACAGACTGTTGCAGTTCACCATCCCCAATATGGATTCTCTGTTCAAGGAGAAT
ATCAGGGAAGAGTCTTGTTTAAAAATTACTCACTTAATGATGCAACAATTACTCTGCATAACATAGGATT
CTCTGATTCTGGAAAATACATCTGCAAAGCTGTTACATTCCCGCTTGGAAATGCCCAGTCCTCTACAACT
GTAACTGTGTTAGTTGAACCCACTGTGAGCCTGATAAAAGGGCCAGATTCTTTAATTGATGGAGGAAATG
AAACAGTAGCAGCCATTTGCATCGCAGCCACTGGAAAACCCGTTGCACATATTGACTGGGAAGGTGATCT
TGGTGAAATGGAATCCACTACAACTTCTTTTCCAAATGAAACGGCAACGATTATCAGCCAGTACAAGCTA
TTTCCAACCAGATTTGCTAGAGGAAGGCGAATTACTTGTGTTGTAAAACATCCAGCCTTGGAAAAGGACA
TCCGATACTCTTTCATATTAGACATACAGTATGCTCCTGAAGTTTCGGTAACAGGATATGATGGAAATTG
GTTTGTAGGAAGAAAAGGTGTTAATCTCAAATGTAATGCTGATGCAAATCCACCACCCTTCAAATCTGTG
TGGAGCAGGTTGGATGGACAATGGCCTGATGGTTTATTGGCTTCAGACAATACTCTTCATTTTGTCCATC
CATTGACTTTCAATTATTCTGGTGTTTATATCTGTAAAGTGACCAATTCCCTTGGTCAAAGAAGTGACCA
AAAAGTCATCTACATTTCAGATGTTCCATTTAAGCAGACCTCTTCCATAGCTGTAGCTGGAGCGGTAATT
GGAGCTGTTCTTGCCCTTTTCATCATTGCTATCTTTGTGACTGTGCTGCTGACTCCTCGAAAAAAAAGAC
CATCCTATCTTGACAAAGTGATTGACCTTCCACCCACACATAAACCACCTCCTCTGTATGAAGAACGATC
CCCACCTTTGCCTCAGAAAGACCTATTTCAGCCTGAACACTTGCCTTTGCAGACTCAGTTCAAAGAAAGA
GAAGTTGGCAATCTTCAGCACTCTAATGGACTAAATAGCAGGAGTTTTGACTATGAAGATGAGAATCCAG
TTGGGGAAGATGGCATTCAGCAGATGTACCCCCTTTACAATCAAATGTGCTACCAAGACCGGAGCCCTGG
CAAACATCATCAAAATAACGACCCTAAGAGAGTCTACATCGACCCACGAGAACATTATGTGTGA

Translation (487 aa):
MAEGWRWCFVRRTPGLLRGPLLPRSFSGNPRALAGPIIVEPHVTAVWGKNVSLKCLIEVNETITQISWEK
IHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTT
VTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKL
FPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSV
WSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDVPFKQTSSIAVAGAVI
GAVLALFIIAIFVTVLLTPRKKRPSYLDKVIDLPPTHKPPPLYEERSPPLPQKDLFQPEHLPLQTQFKER
EVGNLQHSNGLNSRSFDYEDENPVGEDGIQQMYPLYNQMCYQDRSPGKHHQNNDPKRVYIDPREHYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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