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Report for CCDS83453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83453.1 Public Homo sapiens X SHROOM2 24 110 108 CCDS HistoryNCBI Gene:357Re-query CCDS DB by CCDS ID:83453.1Re-query CCDS DB by GeneID:357See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 83453.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000418909.6 ENSP00000415229.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000418909.6Link to Ensembl Protein Viewer:ENSP00000415229.3Re-query CCDS DB by Nucleotide ID:ENST00000418909Re-query CCDS DB by Protein ID:ENSP00000415229
Original member Current member NCBI NM_001320664.2 NP_001307593.1 Accepted alive Link to Nucleotide Sequence:NM_001320664.2Link to Protein Sequence:NP_001307593.1Re-query CCDS DB by Nucleotide ID:NM_001320664Re-query CCDS DB by Protein ID:NP_001307593Link to BLAST:NP_001307593.1

Chromosomal Locations for CCDS 83453.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 9932779 9932870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9937134 9937685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9939195 9939366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9944644 9944913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9946671 9946937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGGAGACCTCGCGCTCCCCCTCGCCCCAGTTCGCCCCCCAGAAACTGACGGACAAACCTCCCCTGCTCA
TCCAGGATGAGGATTCAACCAGAATTGAGCGGGTGATGGACAACAACACCACGGTGAAGATGGTGCCCAT
CAAGATCGTGCACTCGGAGAGCCAGCCAGAGAAGGAGAGCCGCCAGAGCCTGGCATGCCCCGCCGAGCCA
CCTGCCCTGCCCCACGGGCTGGAGAAAGACCAGATCAAGACGCTGAGCACATCTGAGCAGTTCTACTCGC
GCTTCTGTCTGTACACGCGGCAGGGTGCTGAGCCCGAGGCCCCACATAGGGCCCAGCCGGCTGAGCCCCA
GCCCCTGGGCACCCAGGTGCCCCCCGAGAAAGACCGCTGCACCTCCCCTCCAGGGCTCAGCTACATGAAG
GCCAAAGAGAAGACTGTGGAAGACCTGAAGTCGGAGGAGCTGGCCAGGGAGATCGTGGGGAAGGATAAGT
CCCTGGCCGACATCCTGGATCCCAGTGTGAAGATCAAAACCACTATGGACTTGATGGAAGGCATCTTCCC
CAAAGACGAGCACCTCCTGGAAGAAGCCCAGCAACGGAGGAAGCTGCTCCCCAAAATCCCCTCTCCTAGA
AGCACAGAGGAGAGGAAAGAGGAGCCCAGCGTGCCTGCGGCCGTGTCCCTGGCCACCAATTCTACCTACT
ACAGCACGTCGGCCCCCAAGGCGGAGCTGCTGATCAAGATGAAGGACCTGCAGGAGCAGCAGGAGCACGA
AGAGGATTCGGGAAGCGACTTGGACCACGACCTGTCGGTGAAGAAGGAGCTCATCGAGAGCATCAGCCGC
AAGCTGCAGGTGCTCCGGGAGGCCCGCGAGAGCCTGCTGGAGGACGTGCAGGCCAACACCGTGCTGGGGG
CCGAGGTGGAGGCCATCGTGAAAGGCGTCTGCAAGCCCAGCGAGTTTGACAAGTTCCGGATGTTCATTGG
AGACCTGGACAAAGTGGTGAACCTCCTGCTGTCGCTGTCAGGCCGCCTGGCCCGGGTGGAGAATGCCCTC
AATAATTTGGACGACGGCGCTTCTCCCGGTGATCGGCAATCACTGCTTGAGAAGCAGAGAGTCCTGATCC
AGCAGCACGAGGACGCCAAGGAGCTCAAGGAGAACCTGGACCGCCGCGAGCGCATCGTCTTTGACATTTT
GGCCAACTATCTGAGCGAGGAGAGCCTCGCGGACTATGAGCACTTCGTGAAGATGAAGTCGGCCCTCATC
ATCGAGCAGCGGGAGCTGGAAGATAAAATCCACCTTGGTGAAGAGCAGCTGAAGTGCTTATTGGACAGCC
TTCAGCCCGAAAGGGGCAAATAA

Translation (450 aa):
METSRSPSPQFAPQKLTDKPPLLIQDEDSTRIERVMDNNTTVKMVPIKIVHSESQPEKESRQSLACPAEP
PALPHGLEKDQIKTLSTSEQFYSRFCLYTRQGAEPEAPHRAQPAEPQPLGTQVPPEKDRCTSPPGLSYMK
AKEKTVEDLKSEELAREIVGKDKSLADILDPSVKIKTTMDLMEGIFPKDEHLLEEAQQRRKLLPKIPSPR
STEERKEEPSVPAAVSLATNSTYYSTSAPKAELLIKMKDLQEQQEHEEDSGSDLDHDLSVKKELIESISR
KLQVLREARESLLEDVQANTVLGAEVEAIVKGVCKPSEFDKFRMFIGDLDKVVNLLLSLSGRLARVENAL
NNLDDGASPGDRQSLLEKQRVLIQQHEDAKELKENLDRRERIVFDILANYLSEESLADYEHFVKMKSALI
IEQRELEDKIHLGEEQLKCLLDSLQPERGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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