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Report for CCDS47319.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47319.1 Public Homo sapiens 5 MFAP3 24 110 108 CCDS HistoryNCBI Gene:4238Re-query CCDS DB by CCDS ID:47319.1Re-query CCDS DB by GeneID:4238See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47319.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000439768.2 ENSP00000414219.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439768.2Link to Ensembl Protein Viewer:ENSP00000414219.2Re-query CCDS DB by Nucleotide ID:ENST00000439768Re-query CCDS DB by Protein ID:ENSP00000414219
Original member Current member NCBI NM_001135037.2 NP_001128509.1 Accepted alive Link to Nucleotide Sequence:NM_001135037.2Link to Protein Sequence:NP_001128509.1Re-query CCDS DB by Nucleotide ID:NM_001135037Re-query CCDS DB by Protein ID:NP_001128509Link to BLAST:NP_001128509.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128509.1 216 P55082-2 216 100% 0 0

Chromosomal Locations for CCDS 47319.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 154053063 154053713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGAGTGTCTATTACATGATTGTTTGCCTGATTGCCTTTACAATCACACTCATCTTGAATGTCACACGGC
TGTGCATGATGAGCAGCCATCTTCGCAAGACTGAGAAGGCTATCAATGAGTTCTTTAGAACTGAAGGGGC
TGAGAAACTTCAGAAGGCCTTTGAGATTGCAAAACGTATCCCCATCATTACCTCAGCCAAAACTCTGGAG
CTCGCCAAAGTCACACAATTTAAGACCATGGAGTTTGCTCGTTATATTGAAGAACTGGCAAGAAGTGTCC
CTCTTCCACCTCTTATTCTAAACTGTCGAGCCTTTGTTGAGGAGATGTTTGAGGCTGTGCGAGTGGACGA
CCCTGATGACCTGGGTGAAAGAATTAAAGAGAGACCTGCCTTGAATGCTCAAGGTGGCATCTATGTCATT
AACCCAGAGATGGGACGGAGTAATTCACCAGGAGGAGATTCAGATGATGGCTCTCTGAATGAACAAGGCC
AGGAAATAGCAGTTCAGGTTTCTGTCCACCTTCAGTCAGAAACCAAAAGTATTGATACAGAGTCTCAAGG
CAGCAGTCATTTCAGTCCACCTGATGATATAGGATCTGCAGAATCTAACTGTAACTACAAAGATGGGGCA
TATGAAAACTGTCAGCTGTAA

Translation (216 aa):
MSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLE
LAKVTQFKTMEFARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDPDDLGERIKERPALNAQGGIYVI
NPEMGRSNSPGGDSDDGSLNEQGQEIAVQVSVHLQSETKSIDTESQGSSHFSPPDDIGSAESNCNYKDGA
YENCQL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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