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Report for CCDS4679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4679.1 Public Homo sapiens 6 RPP21 24 110 108 CCDS HistoryNCBI Gene:79897Re-query CCDS DB by CCDS ID:4679.1Re-query CCDS DB by GeneID:79897See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4679.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000442966.7 ENSP00000403833.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000442966.7Link to Ensembl Protein Viewer:ENSP00000403833.2Re-query CCDS DB by Nucleotide ID:ENST00000442966Re-query CCDS DB by Protein ID:ENSP00000403833
Original member Current member NCBI NM_024839.4 NP_079115.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024839.4Link to Protein Sequence:NP_079115.1Re-query CCDS DB by Nucleotide ID:NM_024839Re-query CCDS DB by Protein ID:NP_079115Link to BLAST:NP_079115.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079115.1 154 Q9H633-1 154 100% 0 0

Chromosomal Locations for CCDS 4679.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30345172 30345228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30345298 30345398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30345491 30345573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30346432 30346557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30346713 30346810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGGCGGGGCCGGTGAAGGACCGCGAGGCCTTCCAGAGGCTCAACTTCCTGTACCAGGCCGCCCATTGTG
TCCTTGCCCAGGACCCCGAGAACCAGGCGCTGGCGAGGTTTTACTGCTACACTGAGAGGACCATTGCGAA
GCGGCTCGTCTTGCGGCGGGATCCCTCGGTGAAGAGGACTCTCTGTCGAGGCTGCTCTTCCCTCCTCGTC
CCGGGCCTCACCTGCACCCAGCGCCAGAGACGCTGCAGGGGACAGCGCTGGACCGTACAGACCTGCCTAA
CATGCCAGCGCAGCCAACGCTTCCTCAATGATCCCGGGCATTTACTCTGGGGAGACAGGCCTGAGGCCCA
GCTCGGGAGCCAAGCAGATTCCAAACCACTACAACCCTTGCCAAACACAGCCCACTCCATTTCAGACCGC
CTTCCTGAGGAGAAAATGCAGACTCAGGGTTCCAGTAACCAGTGA

Translation (154 aa):
MAGPVKDREAFQRLNFLYQAAHCVLAQDPENQALARFYCYTERTIAKRLVLRRDPSVKRTLCRGCSSLLV
PGLTCTQRQRRCRGQRWTVQTCLTCQRSQRFLNDPGHLLWGDRPEAQLGSQADSKPLQPLPNTAHSISDR
LPEEKMQTQGSSNQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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