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Report for CCDS45040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45040.1 Public Homo sapiens 13 STOML3 24 110 108 CCDS HistoryNCBI Gene:161003Re-query CCDS DB by CCDS ID:45040.1Re-query CCDS DB by GeneID:161003See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 45040.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000423210.1 ENSP00000401989.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000423210.1Link to Ensembl Protein Viewer:ENSP00000401989.1Re-query CCDS DB by Nucleotide ID:ENST00000423210Re-query CCDS DB by Protein ID:ENSP00000401989
Original member Current member NCBI NM_001144033.2 NP_001137505.1 Accepted alive Link to Nucleotide Sequence:NM_001144033.2Link to Protein Sequence:NP_001137505.1Re-query CCDS DB by Nucleotide ID:NM_001144033Re-query CCDS DB by Protein ID:NP_001137505Link to BLAST:NP_001137505.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137505.1 282 Q8TAV4-2 282 100% 0 0

Chromosomal Locations for CCDS 45040.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 38966825 38967049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38968400 38968534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38970185 38970388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38972512 38972594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38976540 38976612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38976694 38976797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38980052 38980076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGAACTCCAGAGGCGAGCTTGTAGGTGTCAACAATAAACGGCTTGGTGTATGTGGCTGGATCCTGTTTT
CCCTCTCTTTCCTGTTGGTGATCATTACCTTCCCCATCTCCATATGGATGTGCTTGAAGATCATTAAGGA
GTATGAACGTGCTGTTGTATTCCGTCTGGGACGCATCCAAGCTGACAAAGCCAAGGGGCCAGGTTTGATC
CTGGTCCTGCCATGCATAGATGTGTTTGTCAAAGTTGACCTCCGAACAGTTACTTGCAACATTCCTCCAC
AAGAGATCCTCACCAGAGACTCCGTAACTACTCAGGTAGATGGAGTTGTCTATTACAGAATCTATAGTGC
TGTCTCAGCAGTGGCTAATGTCAACGATGTCCATCAAGCAACATTTCTGCTGGCTCAAACCACTCTGAGA
AATGTCTTAGGGACACAGACCTTGTCCCAGATCTTAGCTGGACGAGAAGAGATCGCCCATAGCATCCAGA
CTTTACTTGATGATGCCACCGAACTGTGGGGGATCCGGGTGGCCCGAGTGGAAATCAAAGATGTTCGGAT
TCCCGTGCAGTTGCAGAGATCCATGGCAGCCGAGGCTGAGGCCACCCGGGAAGCGAGAGCCAAGGTCCTT
GCAGCTGAAGGAGAAATGAATGCTTCCAAATCCCTGAAGTCAGCCTCCATGGTGCTGGCTGAGTCTCCCA
TAGCTCTCCAGCTGCGCTACCTGCAGACCTTGAGCACGGTAGCCACCGAGAAGAATTCTACGATTGTGTT
TCCTCTGCCCATGAATATACTAGAGGGCATTGGTGGCGTCAGCTATGATAACCACAAGAAGCTTCCAAAT
AAAGCCTGA

Translation (282 aa):
MNSRGELVGVNNKRLGVCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGPGLI
LVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLR
NVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARAKVL
AAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTVATEKNSTIVFPLPMNILEGIGGVSYDNHKKLPN
KA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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