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Report for CCDS10407.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10407.1 Public Homo sapiens 16 PGAP6 24 110 108 CCDS HistoryNCBI Gene:58986Re-query CCDS DB by CCDS ID:10407.1Re-query CCDS DB by GeneID:58986See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10407.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000431232.7 ENSP00000401338.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000431232.7Link to Ensembl Protein Viewer:ENSP00000401338.2Re-query CCDS DB by Nucleotide ID:ENST00000431232Re-query CCDS DB by Protein ID:ENSP00000401338
Original member Current member NCBI NM_021259.3 NP_067082.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021259.3Link to Protein Sequence:NP_067082.2Re-query CCDS DB by Nucleotide ID:NM_021259Re-query CCDS DB by Protein ID:NP_067082Link to BLAST:NP_067082.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067082.2 771 Q9HCN3 771 100% 0 0

Chromosomal Locations for CCDS 10407.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 371987 372283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 372611 372727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 374005 374151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 374221 374399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 374756 374892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 375133 375256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 375345 375435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 376136 376455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 376544 376812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 377037 377164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 377378 377585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 377671 377848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 381701 381821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2316 nt):
ATGGGCCGGGCTGGCACCGGGACCGGGGGCGAGGCGGTGGCCGCGGTGGTGGCGGGGCCGCTGCTGCTGC
TGCTGCTTGCCCGGCCCCCGCCTGCCTCCGCCGGCTACAGCGGGAAGAGCGAGGTGGGGCTGGTGTCCGA
GCACTTCTCGCAGGCCCCGCAGAGGCTGTCCTTCTACAGCTGGTACGGCAGTGCCAGGCTCTTCCGCTTC
CGCGTGCCCCCAGATGCTGTGCTTCTACGCTGGCTCCTGCAGGTCTCCCGGGAGAGCGGCGCTGCCTGCA
CCGACGCGGAGATCACCGTGCACTTCCGTTCCGGCGCCCCTCCGGTCATCAACCCGCTGGGCACCAGCTT
CCCGGACGACACCGCGGTACAGCCCTCCTTCCAGGTCGGGGTGCCGCTGAGCACCACACCGAGAAGCAAT
GCCTCCGTCAACGTTTCCCACCCGGCCCCCGGGGACTGGTTCGTGGCCGCCCACCTGCCCCCCTCATCCC
AGAAGATCGAGTTGAAGGGCTTGGCTCCCACCTGTGCCTACGTCTTCCAGCCTGAACTGCTGGTCACGCG
GGTGGTCGAGATTTCCATCATGGAGCCGGACGTGCCCCTTCCTCAGACCCTCCTCTCCCATCCCAGCTAC
CTCAAGGTCTTTGTCCCCGATTACACGCGGGAGCTTCTGCTGGAGCTGCGGGACTGCGTGTCCAATGGGA
GCCTGGGCTGCCCCGTGCGTCTCACCGTGGGCCCGGTCACCCTGCCTAGCAACTTCCAGAAGGTGCTCAC
CTGCACCGGTGCCCCCTGGCCCTGCCGCCTGCTGCTGCCCTCACCGCCCTGGGACCGGTGGCTGCAAGTG
ACAGCTGAGAGCCTGGTGGGGCCCCTCGGGACAGTGGCTTTCAGTGCTGTAGCTGCCCTCACAGCTTGCA
GGCCACGGAGCGTGACCATCCAGCCCCTTCTGCAGAGCAGCCAAAACCAGAGCTTCAATGCCTCCTCTGG
TCTGCTGTCCCCGAGCCCCGACCACCAGGACCTGGGCAGGAGTGGCAGGGTGGACCGCAGCCCCTTCTGC
CTCACAAACTACCCAGTCACGCGGGAGGACATGGACGTGGTGTCGGTGCACTTCCAGCCCCTGGACAGGG
TCTCGGTGAGGGTGTGTTCGGACACGCCCTCCGTGATGCGGCTGCGCCTGAACACCGGCATGGACAGCGG
GGGTTCCCTCACCATCTCCCTGCGGGCCAACAAGACAGAGATGCGGAACGAGACCGTCGTAGTGGCCTGC
GTGAATGCTGCCTCGCCCTTCCTTGGCTTCAATACTTCGCTCAACTGCACCACAGCCTTCTTCCAGGGCT
ACCCTTTGTCTCTGAGCGCCTGGTCTCGCAGGGCCAACCTCATCATCCCCTACCCAGAGACAGACAACTG
GTACCTCTCCCTGCAGCTCATGTGCCCTGAGAATGCTGAGGACTGTGAGCAGGCTGTGGTCCACGTGGAG
ACCACCTTGTACCTGGTGCCCTGTTTGAACGATTGTGGACCCTATGGCCAGTGCCTCCTGCTCCGCAGAC
ACAGCTACCTGTATGCCAGCTGCAGCTGCAAGGCAGGCTGGCGTGGGTGGAGCTGCACGGACAACAGCAC
AGCCCAGACGGTGGCCCAGCAGAGGGCGGCCACACTGCTGCTCACGCTCAGCAACCTCATGTTCCTGGCC
CCCATCGCCGTCTCAGTGCGGCGATTCTTCCTGGTGGAGGCCTCCGTCTACGCCTACACCATGTTCTTCT
CCACGTTCTACCACGCCTGCGACCAGCCCGGGGAGGCGGTGCTGTGCATCCTCAGCTACGACACGCTGCA
GTACTGCGACTTCTTGGGCTCCGGGGCGGCCATCTGGGTCACCATCCTGTGCATGGCACGGCTCAAGACA
GTCCTGAAATACGTGCTGTTTCTTCTGGGTACACTGGTCATCGCCATGTCCTTGCAGCTGGACCGCAGGG
GCATGTGGAACATGCTGGGGCCCTGCCTCTTTGCCTTCGTGATCATGGCCTCCATGTGGGCTTACCGCTG
CGGGCACCGGCGCCAGTGCTACCCCACCTCGTGGCAGCGCTGGGCCTTCTACCTCCTGCCCGGCGTCTCT
ATGGCCTCTGTGGGCATCGCCATCTACACCTCCATGATGACTAGCGACAACTACTACTACACCCACAGCA
TCTGGCACATCCTGCTGGCCGGGAGCGCAGCCTTGCTGCTGCCGCCACCTGACCAGCCCGCCGAGCCCTG
GGCCTGCTCGCAGAAATTCCCCTGCCACTATCAGATCTGCAAGAACGATCGGGAGGAACTGTACGCAGTG
ACGTGA

Translation (771 aa):
MGRAGTGTGGEAVAAVVAGPLLLLLLARPPPASAGYSGKSEVGLVSEHFSQAPQRLSFYSWYGSARLFRF
RVPPDAVLLRWLLQVSRESGAACTDAEITVHFRSGAPPVINPLGTSFPDDTAVQPSFQVGVPLSTTPRSN
ASVNVSHPAPGDWFVAAHLPPSSQKIELKGLAPTCAYVFQPELLVTRVVEISIMEPDVPLPQTLLSHPSY
LKVFVPDYTRELLLELRDCVSNGSLGCPVRLTVGPVTLPSNFQKVLTCTGAPWPCRLLLPSPPWDRWLQV
TAESLVGPLGTVAFSAVAALTACRPRSVTIQPLLQSSQNQSFNASSGLLSPSPDHQDLGRSGRVDRSPFC
LTNYPVTREDMDVVSVHFQPLDRVSVRVCSDTPSVMRLRLNTGMDSGGSLTISLRANKTEMRNETVVVAC
VNAASPFLGFNTSLNCTTAFFQGYPLSLSAWSRRANLIIPYPETDNWYLSLQLMCPENAEDCEQAVVHVE
TTLYLVPCLNDCGPYGQCLLLRRHSYLYASCSCKAGWRGWSCTDNSTAQTVAQQRAATLLLTLSNLMFLA
PIAVSVRRFFLVEASVYAYTMFFSTFYHACDQPGEAVLCILSYDTLQYCDFLGSGAAIWVTILCMARLKT
VLKYVLFLLGTLVIAMSLQLDRRGMWNMLGPCLFAFVIMASMWAYRCGHRRQCYPTSWQRWAFYLLPGVS
MASVGIAIYTSMMTSDNYYYTHSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCHYQICKNDREELYAV
T


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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