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Report for CCDS69214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
69214.1 Public Homo sapiens 6 VTA1 24 110 108 CCDS HistoryNCBI Gene:51534Re-query CCDS DB by CCDS ID:69214.1Re-query CCDS DB by GeneID:51534See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 69214.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000452973.6 ENSP00000395767.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000452973.6Link to Ensembl Protein Viewer:ENSP00000395767.2Re-query CCDS DB by Nucleotide ID:ENST00000452973Re-query CCDS DB by Protein ID:ENSP00000395767
Original member Current member NCBI NM_001286372.2 NP_001273301.1 Accepted alive Link to Nucleotide Sequence:NM_001286372.2Link to Protein Sequence:NP_001273301.1Re-query CCDS DB by Nucleotide ID:NM_001286372Re-query CCDS DB by Protein ID:NP_001273301Link to BLAST:NP_001273301.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273301.1 222 Q9NP79-2 222 100% 0 0

Chromosomal Locations for CCDS 69214.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 142147367 142147399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142169550 142169677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142170346 142170421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142189426 142189534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142198439 142198615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142218498 142218643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGACAAGCGAGACCCTGTGGTGGCTTATTACTCTAAAGAAGCAGTTGGGTGATAATGAAGCTATTACTC
AAGAAATAGTGGGCTGTGCCCATTTGGAGAATTATGCTTTGAAAATGTTTTTGTATGCAGACAATGAAGA
TCGTGCTGGACGATTTCACAAAAACATGATCAAGTCCTTCTATACTGCAAGTCTTTTGATAGATGTCATA
ACAGTATTTGGAGAACTCACTGATGAAAATGTGAAACACAGGAAGTATGCCAGATGGAAGGCAACATACA
TCCATAATTGTTTAAAGAATGGGGAGACTCCTCAAGCAGGCCCTGTTGGAATTGAAGAAGATAATGATAT
TGAAGAAAATGAAGATGCTGGAGCAGCCTCTCTGCCCACTCAGCCAACTCAGCCATCATCATCTTCAACT
TATGACCCAAGCAACATGCCATCAGGCAACTATACTGGAATACAGATTCCTCCGGGTGCACACGCTCCAG
CTAATACACCAGCAGAAGTGCCTCACAGCACAGGGGATGTTCGTCTAACCCCAGAAGACTTTGCTAGAGC
TCAGAAGTACTGCAAATATGCTGGCAGTGCTTTGCAGTATGAAGATGTAAGCACTGCTGTCCAGAATCTA
CAAAAGGCTCTCAAGTTACTGACGACAGGCAGAGAATGA

Translation (222 aa):
MTSETLWWLITLKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVI
TVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENEDAGAASLPTQPTQPSSSST
YDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTGDVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNL
QKALKLLTTGRE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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