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Report for CCDS73742.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73742.1 Public Homo sapiens 15 SLC24A1 24 110 108 CCDS HistoryNCBI Gene:9187Re-query CCDS DB by CCDS ID:73742.1Re-query CCDS DB by GeneID:9187See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73742.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339868.10 ENSP00000341837.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000339868.10Link to Ensembl Protein Viewer:ENSP00000341837.7Re-query CCDS DB by Nucleotide ID:ENST00000339868Re-query CCDS DB by Protein ID:ENSP00000341837
Original member Current member EBI ENST00000399033.8 ENSP00000381991.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399033.8Link to Ensembl Protein Viewer:ENSP00000381991.4Re-query CCDS DB by Nucleotide ID:ENST00000399033Re-query CCDS DB by Protein ID:ENSP00000381991
Original member Current member NCBI NM_001301031.1 NP_001287960.1 Accepted alive Link to Nucleotide Sequence:NM_001301031.1Link to Protein Sequence:NP_001287960.1Re-query CCDS DB by Nucleotide ID:NM_001301031Re-query CCDS DB by Protein ID:NP_001287960Link to BLAST:NP_001287960.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287960.1 1069 O60721-3 1069 100% 0 0

Chromosomal Locations for CCDS 73742.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 65624081 65625970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65638128 65638181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65639595 65639703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65644427 65644513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65645612 65645703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65650382 65650942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65652642 65652808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65653830 65654079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3210 nt):
ATGGGGAAATTGATCAGGATGGGGCCGCAAGAGAGGTGGTTACTCCGGACAAAGCGGCTTCATTGGAGTC
GCCTCCTCTTCTTACTGGGAATGTTGATCATCGGTTCTACTTATCAGCACCTTAGGAGACCCCGGGGCCT
TTCCTCATTGTGGGCAGCAGTCTCTTCTCATCAGCCTATAAAACTGGCCAGTCGGGACCTCTCCAGTGAA
GAGATGATGATGATGAGCAGCAGCCCTTCAAAACCTAGCTCCGAAATGGGGGGTAAGATGCTGGTACCCC
AAGCCTCAGTGGGCAGTGATGAAGCAACACTGAGCATGACAGTGGAGAATATCCCCAGTATGCCTAAAAG
AACAGCCAAGATGATCCCAACAACAACCAAGAATAATTACAGCCCAACAGCAGCAGGTACAGAAAGAAGG
AAGGAAGACACCCCAACATCCAGTAGAACACTGACTTACTACACCTCAACTTCAAGCAGACAAATAGTAA
AAAAGTATACCCCAACACCCAGGGGAGAAATGAAGAGCTACAGCCCAACTCAAGTGAGGGAAAAGGTGAA
GTATACTCCTTCCCCACGTGGTAGAAGAGTAGGCACTTACGTGCCGTCCACATTCATGACAATGGAAACA
AGCCATGCGATCACCCCCAGGACAACAGTGAAAGACAGTGACATTACAGCAACCTATAAAATACTCGAAA
CCAACTCTCTTAAGAGAATAATGGAGGAAACCACCCCAACCACTCTCAAGGGAATGTTTGATAGCACCCC
AACTTTTCTGACACATGAGGTAGAAGCAAACGTCTTGACTTCTCCAAGGAGCGTCATGGAAAAAAACAAC
CTGTTTCCCCCCAGAAGAGTGGAAAGTAACAGCTCAGCCCATCCCTGGGGGTTAGTGGGAAAGAGCAACC
CGAAGACTCCCCAGGGAACAGTCCTGTTGCATACCCCAGCCACCTCTGAGGGGCAGGTGACAATAAGCAC
CATGACAGGCAGCAGCCCAGCAGAAACCAAAGCCTTCACTGCTGCCTGGAGTCTTAGGAATCCTTCACCC
AGGACCAGTGTATCAGCCATCAAAACAGCCCCAGCCATAGTCTGGAGGCTGGCAAAGAAACCTTCCACAG
CACCCAGCACCTCAACAACCCCTACGGTCAGGGCAAAGCTGACCATGCAGGTCCATCACTGTGTGGTTGT
GAAGCCAACCCCAGCCATGCTCACCACTCCCTCCCCAAGCCTCACAACAGCCCTGCTCCCAGAGGAGCTC
AGTCCTAGTCCCTCAGTGCTGCCTCCCAGCTTGCCAGACCTCCACCCCAAGGGAGAGTACCCCCCAGATC
TGTTCAGTGTGGAGGAGCGGCGGCAGGGCTGGGTGGTCCTGCACGTTTTTGGCATGATGTATGTGTTTGT
GGCCTTGGCCATTGTTTGCGACGAGTACTTCGTTCCAGCCCTGGGTGTCATCACAGACAAGCTGCAGATC
TCCGAGGATGTGGCAGGCGCCACATTCATGGCTGCTGGAGGCTCTGCTCCTGAGCTCTTCACCTCCCTCA
TCGGTGTCTTCATTTCCCACAGCAACGTGGGCATTGGTACCATTGTGGGCTCTGCTGTGTTCAACATTCT
CTTTGTCATTGGCACTTGTTCCCTCTTCTCCCGAGAGATCCTCAACCTCACCTGGTGGCCCTTATTCCGT
GATGTCTCCTTCTACATCCTTGACCTGATAATGCTCATCCTCTTCTTCCTGGACAGCCTCATTGCCTGGT
GGGAGAGCCTGCTGCTGCTGCTGGCCTATGCCTTCTATGTGTTCACCATGAAGTGGAACAAGCATATCGA
GGTCTGGGTGAAGGAGCAGCTCAGCAGGAGGCCAGTGGCCAAGGTCATGGCCTTAGAAGACCTCAGCAAG
CCGGGCGATGGGGCCATTGCGGTGGATGAGCTACAGGATAACAAGAAGCTGAAGCTCCCGTCCTTGCTGA
CCCGAGGGAGCAGCTCGACCTCTCTGCACAACAGCACCATCCGCAGCACCATCTACCAGCTCATGCTCCA
CAGCCTGGACCCCCTGAGGGAAGTTCGCCTTGCCAAGGAGAAGGAGGAGGAGAGCTTGAATCAAGGGGCC
AGAGCCCAACCCCAGGCCAAAGCAGAAAGCAAACCAGAAGAGGAGGAGCCAGCCAAGCTCCCTGCGGTCA
CGGTCACACCAGCCCCTGTTCCAGACATCAAGGGAGATCAGAAGGAGAATCCAGGCGGTCAGGAAGATGT
GGCTGAGGCCGAGAGCACAGGTGAAATGCCAGGCGAAGAGGGCGAAACTGCTGGTGAAGGTGAAACTGAA
GAGAAAAGTGGAGGTGAAACTCAACCAGAAGGTGAAGGTGAAACTGAAACACAAGGAAAAGGAGAAGAAT
GTGAAGATGAAAATGAAGCAGAAGGAAAAGGAGACAATGAAGGTGAAGATGAGGGTGAAATCCACGCAGA
AGATGGTGAAATGAAAGGTAATGAAGGTGAAACTGAAAGCCAGGAACTCAGTGCTGAAAATCACGGTGAA
GCCAAAAATGATGAGAAAGGTGTAGAAGATGGAGGGGGAAGTGATGGAGGGGATAGCGAAGAGGAGGAAG
AGGAGGAGGAAGAGCAGGAGGAAGAGGAGGAGGAGGAAGAGCAGGAGGAAGAGGAGGAGGAGGAGGAGGA
AGAGGAGGAGAAGGGAAATGAAGAGCCTCTGTCCCTGGACTGGCCTGAAACCAGGCAGAAGCAGGCCATT
TACCTCTTCCTTCTGCCCATCGTGTTCCCACTGTGGCTGACAGTCCCCGACGTCCGAAGGCAGGTTGGTG
AAACAATAGGGATTTCTGAAGAGATCATGGGCCTGACAATCCTTGCAGCAGGCACATCAATTCCTGACCT
CATCACCAGTGTGATTGTCGCTCGAAAAGGCCTGGGAGACATGGCTGTGTCAAGCTCTGTGGGCAGTAAC
ATATTTGATATCACTGTGGGCTTGCCTGTTCCTTGGTTGCTTTTCTCTCTTATCAATGGATTACAGCCAG
TTCCAGTCAGCAGCAATGGCTTGTTTTGTGCAATTGTTTTGCTTTTTCTCATGCTTCTGTTTGTGATCTC
TTCAATTGCGTCATGTAAATGGAGAATGAACAAGATCCTGGGCTTCACAATGTTCCTCCTTTACTTTGTA
TTCCTGATAATCAGTGTGATGTTAGAAGATCGAATCATATCCTGTCCTGTATCTGTCTGA

Translation (1069 aa):
MGKLIRMGPQERWLLRTKRLHWSRLLFLLGMLIIGSTYQHLRRPRGLSSLWAAVSSHQPIKLASRDLSSE
EMMMMSSSPSKPSSEMGGKMLVPQASVGSDEATLSMTVENIPSMPKRTAKMIPTTTKNNYSPTAAGTERR
KEDTPTSSRTLTYYTSTSSRQIVKKYTPTPRGEMKSYSPTQVREKVKYTPSPRGRRVGTYVPSTFMTMET
SHAITPRTTVKDSDITATYKILETNSLKRIMEETTPTTLKGMFDSTPTFLTHEVEANVLTSPRSVMEKNN
LFPPRRVESNSSAHPWGLVGKSNPKTPQGTVLLHTPATSEGQVTISTMTGSSPAETKAFTAAWSLRNPSP
RTSVSAIKTAPAIVWRLAKKPSTAPSTSTTPTVRAKLTMQVHHCVVVKPTPAMLTTPSPSLTTALLPEEL
SPSPSVLPPSLPDLHPKGEYPPDLFSVEERRQGWVVLHVFGMMYVFVALAIVCDEYFVPALGVITDKLQI
SEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNILFVIGTCSLFSREILNLTWWPLFR
DVSFYILDLIMLILFFLDSLIAWWESLLLLLAYAFYVFTMKWNKHIEVWVKEQLSRRPVAKVMALEDLSK
PGDGAIAVDELQDNKKLKLPSLLTRGSSSTSLHNSTIRSTIYQLMLHSLDPLREVRLAKEKEEESLNQGA
RAQPQAKAESKPEEEEPAKLPAVTVTPAPVPDIKGDQKENPGGQEDVAEAESTGEMPGEEGETAGEGETE
EKSGGETQPEGEGETETQGKGEECEDENEAEGKGDNEGEDEGEIHAEDGEMKGNEGETESQELSAENHGE
AKNDEKGVEDGGGSDGGDSEEEEEEEEEQEEEEEEEEQEEEEEEEEEEEEKGNEEPLSLDWPETRQKQAI
YLFLLPIVFPLWLTVPDVRRQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSN
IFDITVGLPVPWLLFSLINGLQPVPVSSNGLFCAIVLLFLMLLFVISSIASCKWRMNKILGFTMFLLYFV
FLIISVMLEDRIISCPVSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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