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Report for CCDS3750.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3750.1 Public Homo sapiens 4 SCOC 24 110 108 CCDS HistoryNCBI Gene:60592Re-query CCDS DB by CCDS ID:3750.1Re-query CCDS DB by GeneID:60592See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3750.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338517.8 ENSP00000345262.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338517.8Link to Ensembl Protein Viewer:ENSP00000345262.4Re-query CCDS DB by Nucleotide ID:ENST00000338517Re-query CCDS DB by Protein ID:ENSP00000345262
Original member Current member EBI ENST00000394203.7 ENSP00000377753.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394203.7Link to Ensembl Protein Viewer:ENSP00000377753.3Re-query CCDS DB by Nucleotide ID:ENST00000394203Re-query CCDS DB by Protein ID:ENSP00000377753
Original member Current member EBI ENST00000394205.7 ENSP00000377755.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394205.7Link to Ensembl Protein Viewer:ENSP00000377755.3Re-query CCDS DB by Nucleotide ID:ENST00000394205Re-query CCDS DB by Protein ID:ENSP00000377755
Original member Current member NCBI NM_001153446.1 NP_001146918.1 Accepted alive Link to Nucleotide Sequence:NM_001153446.1Link to Protein Sequence:NP_001146918.1Re-query CCDS DB by Nucleotide ID:NM_001153446Re-query CCDS DB by Protein ID:NP_001146918Link to BLAST:NP_001146918.1
Original member Current member NCBI NM_001153585.1 NP_001147057.1 Accepted alive Link to Nucleotide Sequence:NM_001153585.1Link to Protein Sequence:NP_001147057.1Re-query CCDS DB by Nucleotide ID:NM_001153585Re-query CCDS DB by Protein ID:NP_001147057Link to BLAST:NP_001147057.1
Original member Current member NCBI NM_032547.3 NP_115936.2 Accepted alive Link to Nucleotide Sequence:NM_032547.3Link to Protein Sequence:NP_115936.2Re-query CCDS DB by Nucleotide ID:NM_032547Re-query CCDS DB by Protein ID:NP_115936Link to BLAST:NP_115936.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001146918.1 122 Q9UIL1-2 122 100% 0 0
NP_001147057.1 122 Q9UIL1-2 122 100% 0 0
NP_115936.2 122 Q9UIL1-2 122 100% 0 0

Chromosomal Locations for CCDS 3750.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 140343639 140343708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140379121 140379192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140379569 140379652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140380962 140381104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (369 nt):
ATGGACGGGTCCAGGAAAGAGGAGGAGGAAGACAGCACATTCACCAACATTTCTCTTGCAGATGACATAG
ACCATTCCTCAAGAATTTTGTATCCAAGGCCCAAAAGTTTGTTACCCAAGATGATGAATGCTGACATGGA
TGCAGTTGATGCTGAAAATCAAGTGGAACTGGAGGAAAAAACAAGACTTATTAATCAAGTGTTGGAACTC
CAACACACACTTGAAGATCTCTCTGCAAGAGTAGATGCAGTTAAGGAAGAAAATCTGAAGCTAAAATCAG
AAAACCAAGTTCTTGGACAATATATAGAAAATCTCATGTCAGCTTCTAGTGTTTTTCAAACAACTGACAC
AAAAAGCAAAAGAAAGTAA

Translation (122 aa):
MDGSRKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLEL
QHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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