NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42722.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42722.1 Public Homo sapiens 2 REV1 24 110 108 CCDS HistoryNCBI Gene:51455Re-query CCDS DB by CCDS ID:42722.1Re-query CCDS DB by GeneID:51455See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42722.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393445.7 ENSP00000377091.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393445.7Link to Ensembl Protein Viewer:ENSP00000377091.3Re-query CCDS DB by Nucleotide ID:ENST00000393445Re-query CCDS DB by Protein ID:ENSP00000377091
Original member Current member NCBI NM_001037872.3 NP_001032961.1 Accepted alive Link to Nucleotide Sequence:NM_001037872.3Link to Protein Sequence:NP_001032961.1Re-query CCDS DB by Nucleotide ID:NM_001037872Re-query CCDS DB by Protein ID:NP_001032961Link to BLAST:NP_001032961.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032961.1 1250 Q9UBZ9-2 1250 100% 0 0

Chromosomal Locations for CCDS 42722.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 99401241 99401352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99402244 99402346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99402644 99402800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99402889 99403106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99403695 99403815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99404444 99404677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99405910 99406106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99406325 99406490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99408029 99408131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99410695 99410867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99412731 99412951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99418828 99418947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99421499 99421653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99424152 99424280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99429840 99429945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99434332 99434448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99435834 99435941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99438601 99439310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99442317 99442469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99449336 99449504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99462496 99462622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99464922 99464975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3753 nt):
ATGAGGCGAGGTGGATGGAGGAAGCGAGCTGAAAATGATGGCTGGGAAACATGGGGTGGGTATATGGCTG
CCAAGGTCCAGAAATTGGAGGAACAGTTTCGATCAGATGCTGCTATGCAGAAGGATGGGACTTCATCTAC
AATTTTTAGTGGAGTTGCCATCTATGTTAATGGATACACAGATCCTTCCGCTGAGGAATTGAGAAAACTA
ATGATGTTGCATGGAGGTCAATACCATGTATATTATTCCAGATCTAAAACAACACATATTATTGCCACAA
ATCTTCCCAATGCCAAAATTAAAGAATTAAAGGGGGAAAAAGTAATTCGACCAGAATGGATTGTGGAAAG
CATCAAAGCTGGACGACTCCTCTCCTACATTCCATATCAGCTGTACACCAAGCAGTCCAGTGTGCAGAAA
GGTCTCAGCTTTAATCCTGTATGCAGACCTGAGGATCCTCTGCCAGGTCCAAGCAATATAGCCAAACAGC
TCAACAACAGGGTAAATCACATCGTTAAGAAGATTGAAACGGAAAATGAAGTCAAAGTCAATGGCATGAA
CAGTTGGAATGAAGAAGATGAAAATAATGATTTTAGTTTTGTGGATCTGGAGCAGACCTCTCCGGGAAGG
AAACAGAATGGAATTCCGCATCCCAGAGGGAGCACTGCCATTTTTAATGGACACACTCCTAGCTCTAATG
GTGCCTTAAAGACACAGGATTGCTTGGTGCCCATGGTCAACAGTGTTGCCAGCAGGCTTTCTCCAGCCTT
TTCCCAGGAGGAGGATAAGGCTGAGAAGAGCAGCACTGATTTCAGAGACTGCACTCTGCAGCAGTTGCAG
CAAAGCACCAGAAACACAGATGCTTTGCGGAATCCACACAGAACTAATTCTTTCTCATTATCACCTTTGC
ACAGTAACACTAAAATCAATGGTGCTCACCACTCCACTGTTCAGGGGCCTTCAAGCACAAAAAGCACTTC
TTCAGTATCTACGTTTAGCAAGGCAGCACCTTCAGTGCCATCCAAACCTTCAGACTGCAATTTTATTTCA
AACTTCTATTCTCATTCAAGACTGCATCACATATCAATGTGGAAGTGTGAATTGACTGAGTTTGTCAATA
CCCTACAAAGACAAAGTAATGGTATCTTTCCAGGAAGGGAAAAGTTAAAAAAAATGAAAACAGGCAGGTC
TGCACTTGTTGTAACTGACACAGGAGATATGTCAGTATTGAATTCTCCCAGACATCAGAGCTGTATAATG
CATGTTGATATGGATTGCTTCTTTGTATCAGTGGGTATACGAAATAGACCAGATCTCAAAGGAAAACCAG
TGGCTGTTACAAGTAACAGAGGCACAGGAAGGGCACCTTTACGTCCTGGCGCTAACCCCCAGCTGGAGTG
GCAGTATTACCAGAATAAAATCCTGAAAGGCAAAGCAGATATACCAGATTCATCATTGTGGGAGAATCCA
GATTCTGCGCAAGCAAATGGAATTGATTCTGTTTTGTCAAGGGCTGAAATTGCATCTTGTAGTTATGAGG
CCAGGCAACTTGGCATTAAGAACGGAATGTTTTTTGGGCATGCTAAACAACTATGTCCTAATCTTCAAGC
TGTTCCATACGATTTTCATGCATATAAGGAAGTCGCACAAACATTGTATGAAACATTGGCAAGCTACACT
CATAACATTGAAGCTGTCAGTTGTGATGAAGCGCTGGTAGACATTACCGAAATCCTTGCAGAGACCAAAC
TTACTCCTGATGAATTTGCAAATGCTGTTCGTATGGAAATCAAAGACCAGACGAAATGTGCTGCCTCTGT
TGGAATTGGTTCTAATATTCTCCTGGCTAGAATGGCAACTAGAAAAGCAAAACCAGATGGGCAGTACCAC
CTAAAACCAGAAGAAGTAGATGATTTTATCAGAGGCCAGCTAGTGACCAATCTACCAGGAGTTGGACATT
CAATGGAATCTAAGTTGGCATCTTTGGGAATTAAAACTTGTGGAGACTTGCAGTATATGACCATGGCAAA
ACTCCAAAAAGAATTTGGTCCCAAAACAGGTCAGATGCTTTATAGGTTCTGCCGTGGCTTGGATGATAGA
CCAGTTCGAACTGAAAAGGAAAGAAAATCTGTTTCAGCTGAGATCAACTATGGAATAAGGTTTACTCAGC
CAAAAGAGGCAGAAGCTTTTCTTCTGAGTCTTTCAGAAGAAATTCAAAGAAGACTAGAAGCCACTGGCAT
GAAGGGTAAACGTCTAACTCTCAAAATCATGGTACGAAAGCCTGGGGCTCCTGTAGAAACTGCAAAATTT
GGAGGCCATGGAATTTGTGATAACATTGCCAGGACTGTAACTCTTGACCAGGCAACAGATAATGCAAAAA
TAATTGGAAAGGCGATGCTAAACATGTTTCATACAATGAAACTAAATATATCAGATATGAGAGGGGTTGG
GATTCACGTGAATCAGTTGGTTCCAACTAATCTGAACCCTTCCACATGTCCCAGTCGCCCATCAGTTCAG
TCAAGCCACTTTCCTAGTGGGTCATACTCTGTCCGTGATGTCTTCCAAGTTCAGAAAGCTAAGAAATCCA
CCGAAGAGGAGCACAAAGAAGTATTTCGGGCTGCTGTGGATCTGGAAATATCATCTGCTTCTAGAACTTG
CACTTTCTTGCCACCTTTTCCTGCACATCTGCCGACCAGTCCTGATACTAACAAGGCTGAGTCTTCAGGG
AAATGGAATGGTCTACATACTCCTGTCAGTGTGCAGTCGAGACTTAACCTGAGTATAGAGGTCCCGTCAC
CTTCCCAGCTGGATCAGTCTGTTTTAGAAGCACTTCCACCTGATCTCCGGGAACAAGTAGAGCAAGTCTG
TGCTGTCCAGCAAGCAGAGTCACATGGCGACAAAAAGAAAGAACCAGTAAATGGCTGTAATACAGGAATT
TTGCCACAACCAGTTGGGACAGTCTTGTTGCAAATACCAGAACCTCAAGAATCGAACAGTGACGCAGGAA
TAAATTTAATAGCCCTTCCAGCATTTTCACAGGTGGACCCTGAGGTATTTGCTGCCCTTCCTGCTGAACT
TCAGAGGGAGCTGAAAGCAGCGTATGATCAAAGACAAAGGCAGGGCGAGAACAGCACTCACCAGCAGTCA
GCCAGCGCATCTGTGCCAAAGAATCCTTTACTTCATCTAAAGGCAGCAGTGAAAGAAAAGAAAAGAAACA
AGAAGAAAAAAACCATTGGTTCACCAAAAAGGATTCAGAGTCCTTTGAATAACAAGCTGCTTAACAGTCC
TGCAAAAACTCTGCCAGGGGCCTGTGGCAGTCCCCAGAAGTTAATTGATGGGTTTCTAAAACATGAAGGA
CCTCCTGCAGAGAAACCCCTGGAAGAACTCTCTGCTTCTACTTCAGGTGTGCCAGGCCTTTCTAGTTTGC
AGTCTGACCCAGCTGGCTGTGTGAGACCTCCAGCACCCAATCTAGCTGGAGCTGTTGAATTCAATGATGT
GAAGACCTTGCTCAGAGAATGGATAACTACAATTTCAGATCCAATGGAAGAAGACATTCTCCAAGTTGTG
AAATACTGTACTGATCTAATAGAAGAAAAAGATTTGGAAAAACTGGATCTAGTTATAAAATACATGAAAA
GGCTGATGCAGCAATCGGTGGAATCGGTTTGGAATATGGCATTTGACTTTATTCTTGACAATGTCCAGGT
GGTTTTACAACAAACTTATGGAAGCACATTAAAAGTTACATAA

Translation (1250 aa):
MRRGGWRKRAENDGWETWGGYMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTDPSAEELRKL
MMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELKGEKVIRPEWIVESIKAGRLLSYIPYQLYTKQSSVQK
GLSFNPVCRPEDPLPGPSNIAKQLNNRVNHIVKKIETENEVKVNGMNSWNEEDENNDFSFVDLEQTSPGR
KQNGIPHPRGSTAIFNGHTPSSNGALKTQDCLVPMVNSVASRLSPAFSQEEDKAEKSSTDFRDCTLQQLQ
QSTRNTDALRNPHRTNSFSLSPLHSNTKINGAHHSTVQGPSSTKSTSSVSTFSKAAPSVPSKPSDCNFIS
NFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTDTGDMSVLNSPRHQSCIM
HVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILKGKADIPDSSLWENP
DSAQANGIDSVLSRAEIASCSYEARQLGIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYT
HNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYH
LKPEEVDDFIRGQLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDR
PVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKF
GGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRGVGIHVNQLVPTNLNPSTCPSRPSVQ
SSHFPSGSYSVRDVFQVQKAKKSTEEEHKEVFRAAVDLEISSASRTCTFLPPFPAHLPTSPDTNKAESSG
KWNGLHTPVSVQSRLNLSIEVPSPSQLDQSVLEALPPDLREQVEQVCAVQQAESHGDKKKEPVNGCNTGI
LPQPVGTVLLQIPEPQESNSDAGINLIALPAFSQVDPEVFAALPAELQRELKAAYDQRQRQGENSTHQQS
ASASVPKNPLLHLKAAVKEKKRNKKKKTIGSPKRIQSPLNNKLLNSPAKTLPGACGSPQKLIDGFLKHEG
PPAEKPLEELSASTSGVPGLSSLQSDPAGCVRPPAPNLAGAVEFNDVKTLLREWITTISDPMEEDILQVV
KYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQTYGSTLKVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH