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Report for CCDS63029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63029.1 Public Homo sapiens 2 GTDC1 24 110 108 CCDS HistoryNCBI Gene:79712Re-query CCDS DB by CCDS ID:63029.1Re-query CCDS DB by GeneID:79712See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 63029.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000241391.9 ENSP00000241391.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000241391.9Link to Ensembl Protein Viewer:ENSP00000241391.6Re-query CCDS DB by Nucleotide ID:ENST00000241391Re-query CCDS DB by Protein ID:ENSP00000241391
Original member Current member EBI ENST00000392871.6 ENSP00000376610.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392871.6Link to Ensembl Protein Viewer:ENSP00000376610.2Re-query CCDS DB by Nucleotide ID:ENST00000392871Re-query CCDS DB by Protein ID:ENSP00000376610
Original member Current member NCBI NM_001284233.4 NP_001271162.1 Accepted alive Link to Nucleotide Sequence:NM_001284233.4Link to Protein Sequence:NP_001271162.1Re-query CCDS DB by Nucleotide ID:NM_001284233Re-query CCDS DB by Protein ID:NP_001271162Link to BLAST:NP_001271162.1
Original member Current member NCBI NM_001354360.2 NP_001341289.1 Accepted alive Link to Nucleotide Sequence:NM_001354360.2Link to Protein Sequence:NP_001341289.1Re-query CCDS DB by Nucleotide ID:NM_001354360Re-query CCDS DB by Protein ID:NP_001341289Link to BLAST:NP_001341289.1
Original member Current member NCBI NM_001376318.2 NP_001363247.1 Accepted alive Link to Nucleotide Sequence:NM_001376318.2Link to Protein Sequence:NP_001363247.1Re-query CCDS DB by Nucleotide ID:NM_001376318Re-query CCDS DB by Protein ID:NP_001363247Link to BLAST:NP_001363247.1
Original member Current member NCBI NM_001376319.2 NP_001363248.1 Accepted alive Link to Nucleotide Sequence:NM_001376319.2Link to Protein Sequence:NP_001363248.1Re-query CCDS DB by Nucleotide ID:NM_001376319Re-query CCDS DB by Protein ID:NP_001363248Link to BLAST:NP_001363248.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271162.1 376 Q4AE62-4 376 100% 0 0
NP_001341289.1 376 Q4AE62-4 376 100% 0 0
NP_001363247.1 376 Q4AE62-4 376 100% 0 0
NP_001363248.1 376 Q4AE62-4 376 100% 0 0

Chromosomal Locations for CCDS 63029.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 143951999 143952073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143952773 143952843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143970653 143970762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144007182 144007535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144141882 144142055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144145572 144145739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144208603 144208781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGAGTATCCTCATCATTGAAGCATTCTATGGAGGCTCCCATAAACAGCTGGTGGATCTTCTTCAAGAAG
AGTTAGGAGACTGTGTCGTTTATACCCTTCCTGCAAAGAAATGGCATTGGAGAGCCCGGACATCTGCTTT
ATATTTCTCTCAGACCATTCCCATCAGTGAGCATTACAGGACCCTCTTTGCAAGTTCAGTGCTTAACCTG
ACCGAACTGGCTGCCCTTCGGCCTGACCTTGGGAAACTGAAAAAGATTCTGTATTTTCACGAGAACCAGT
TGATATATCCTGTCAAGAAATGTCAGGAGAGGGATTTCCAATATGGATACAACCAAATTCTTTCATGCCT
GGTGGCTGATGTGGTTGTATTCAACTCAGTTTTTAATATGGAATCATTTCTCACTTCCATGGGAAAATTT
ATGAAGCTGATTCCTGATCACAGACCCAAGGATCTGGAAAGCATCATCAGACCCAAGTGCCAAGTTATTT
ACTTTCCCATCAGGTTTCCTGATGTGAGCAGATTCATGCCCAAGCACAAAACAACCCATTTAAAGAAGAT
GCTCGGCCTTAAAGGAAATGGCGGTGCGGTTCTGTCCATGGCCCTTCCTTTTCAGCCAGAGCAGAGAGAT
TCAGAGGATTTATTGAAGAATTTTAATTCAGAGTGTGATACACACTGTGGCCTTGATACTGCACGACAAG
AATATTTGGGTAACTCATTAAGACAGGAATCAGACTTGAAAAAATCCACCTCGTCAGATAATTCAAGCTC
TCATCATGGTGAAAATAAACAAAATCTGACTGTTGATCCCTGTGACATTTTGGGTGGAGTTGATAATCAG
CAAAGACTGCTACACATTGTCTGGCCTCACAGGTGGGAGCATGATAAAGATCCAGAAAGCTTTTTTAAGG
TATTAATGCATCTTAAAGACTTAGGACTCAATTTCCACGTGTCTGTACTTGGAGAAACCTTCACAGATGT
CCCAGGTTGGAAGCTGTGTACTGTGGGTGTTACCCACTTTGTCCTAAAGATTTGGTTTATCCCGAAATAT
TTCCAGCTGAATATCTGTATTCTACACCTGAACAGCTTTCAAAAAGGCTCCAGAATTTCTGCAAGAGACC
AGATATTATAA

Translation (376 aa):
MSILIIEAFYGGSHKQLVDLLQEELGDCVVYTLPAKKWHWRARTSALYFSQTIPISEHYRTLFASSVLNL
TELAALRPDLGKLKKILYFHENQLIYPVKKCQERDFQYGYNQILSCLVADVVVFNSVFNMESFLTSMGKF
MKLIPDHRPKDLESIIRPKCQVIYFPIRFPDVSRFMPKHKTTHLKKMLGLKGNGGAVLSMALPFQPEQRD
SEDLLKNFNSECDTHCGLDTARQEYLGNSLRQESDLKKSTSSDNSSSHHGENKQNLTVDPCDILGGVDNQ
QRLLHIVWPHRWEHDKDPESFFKVLMHLKDLGLNFHVSVLGETFTDVPGWKLCTVGVTHFVLKIWFIPKY
FQLNICILHLNSFQKGSRISARDQIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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