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Report for CCDS6481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6481.1 Public Homo sapiens 9 CCDC171 24 110 108 CCDS HistoryNCBI Gene:203238Re-query CCDS DB by CCDS ID:6481.1Re-query CCDS DB by GeneID:203238See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6481.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380701.8 ENSP00000370077.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380701.8Link to Ensembl Protein Viewer:ENSP00000370077.3Re-query CCDS DB by Nucleotide ID:ENST00000380701Re-query CCDS DB by Protein ID:ENSP00000370077
Original member Current member NCBI NM_173550.4 NP_775821.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173550.4Link to Protein Sequence:NP_775821.2Re-query CCDS DB by Nucleotide ID:NM_173550Re-query CCDS DB by Protein ID:NP_775821Link to BLAST:NP_775821.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775821.2 1326 Q6TFL3-1 1326 100% 0 0

Chromosomal Locations for CCDS 6481.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 15564089 15564129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15571624 15571759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15578849 15579023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15591366 15591556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15594041 15594172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15623267 15623413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15657127 15657219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15666163 15666323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15678758 15678896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15695235 15695337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15721769 15721875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15723681 15723746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15724776 15724976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15727869 15728036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15729610 15729798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15744273 15744777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15745515 15745631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15777600 15777826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15778968 15779150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15784509 15784694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15846702 15846847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15848893 15848947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15874532 15874663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15920270 15920422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15971609 15971836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3981 nt):
ATGAATTTGAATACTTCAAGTAATACTGGTGATACCCAAAGGTTGAAGATTGCCTCATTGGATGTAAAAC
AAATACTTAAAAATGAAACAGAGTTGGATATTACTGATAATCTCAGGAAGAAACTCCATTGGGCTAAAAA
AGAAAAGTTAGAAATAACAACCAAACACAATGCAGAGCTGGCAAGCTATGAGAGCCAGATTGCCAAGCTA
CGGTCCGAGGTTGAAAAGGGAGAAGCATTGCGACAAAGTCTGGAATATGACCTAGCTGTTGCTAGAAAGG
AAGCTGGTCTTGGAAGACGGGCTGCTGAAGAAAGATTAGCCGAGGCACATAGGATCCAAGAAAAACTCTG
TGCACAGAATTCAGAACTTCAAGCAAAGACAAATGAGACTGAGAAAGCATTTCAGACTTCTCAGCAAAAA
TGGAAAGAAGAATGCAGAAGATTTGAACATGATTTGGAGGAAAGAGACAATATGATCCAAAATTGCAATC
GAGAATATGATTTACTTATGAAAGAAAAAAGCAGACTAGAGAAAACTCTACAGGAAGCGTTGGAAAAACA
TCAACGGGAGAAGAATGAGATGGAGTCTCATATCAGGGAGACAGCATTGGAGGAGTTTAGATTACAAGAA
GAACAATGGGAAGCAGAAAGAAGAGAATTACAATTTATAGTACAGGAGCAAGATACTGCTGTGCAAAATA
TGCATAAGAAAGTAGAAAAATTAGAAACAGAACATATGGACTGCTCTGACCTTTTACGGCGACAAACAAG
TGAACTTGAATTTAGCACTCAACGAGAGGAACGCCTTAGAAAAGAATTTGAGGCAACTACTCTAAGAGTG
AGGAAATTAGAAGAAAACATTGAAGCAGAAAGAGCAGCGCATTTGGAATCAAAATTTAATTCTGAAATTA
TTCAGTTACGGATTCGAGACCTTGAAGGAGCTTTGCAAGTAGAGAAGGCCAGTCAAGCAGAAGCTGTTGC
TGATTTGGAAATTATCAAGAATGAATTCAAAGAAGTTGAAAGTGCATATGAGCGAGAAAAGCATAATGCA
CAAGAGAGCTTTGCAAAACTAAATTTATTAGAAAAAGAGTATTTCTCCAAAAATAAGAAACTAAATGAAG
ACATCGAGGAACAGAAGAAAGTAATTATAGACCTTTCAAAGAGACTCCAGTATAATGAAAAAAGTTGCAG
TGAATTACAGGAAGAACTAGTAATGGCTAAGAAGCACCAGGCCTTCCTAGTAGAGACATGTGAAAATAAC
GTGAAAGAATTGGAATCGATCTTGGACAGCTTTACTGTGTCGGGCCAGTGGACATCAGGCATCCACAAGG
ACAAAGATAAACCTCCCAGCTTCTCTGTTGTCCTTGAGAGATTGAGGCGTACCTTGACAGATTACCAGAA
CAAGCTGGAAGATGCATCTAATGAGGAAAAGGCATGTAATGAACTTGATTCTACGAAACAGAAGATAGAC
TCTCACACTAAAAATATAAAGGAACTTCAGGATAAACTGGCTGATGTTAATAAAGAGTTAAGTCATTTAC
ACACTAAATGTGCAGACCGAGAGGCTTTAATAAGCACTTTAAAAGTGGAACTACAAAATGTGCTGCACTG
TTGGGAGAAAGAAAAGGCTCAGGCAGCCCAGTCTGAAAGTGAACTGCAGAAGCTTTCCCAGGCTTTCCAT
AAGGATGCAGAGGAGAAGCTAACCTTCCTTCACACCTTATATCAGCACTTGGTAGCAGGCTGTGTGCTCA
TAAAACAACCAGAAGGCATGCTGGATAAATTCTCTTGGTCTGAGCTTTGTGCAGTCTTACAGGAGAATGT
TGATGCCCTGATTGCAGACCTCAACAGGGCTAATGAGAAGATAAGGCATCTAGAGTATATCTGTAAAAAC
AAGTCTGACACGATGAGAGAGCTTCAGCAGACTCAGGAAGACACCTTTACCAAAGTGGCAGAACAGATCA
AAGCCCAAGAGAGCTGCTGGCACAGACAAAAGAAGGAACTAGAGCTGCAGTATTCTGAACTCTTCCTGGA
GGTGCAGAAGAGGGCACAGAAATTTCAAGAAATTGCTGAAAAAAACATGGAAAAATTGAACCATATTGAG
AAGTCACATGAACAGTTGGTTCTTGAAAATTCGCACTTCAAAAAACTGTTATCACAGACTCAAAGGGAAC
AGATGTCCTTGCTGGCAGCCTGTGCATTAATGGCTGGTGCCTTATATCCCCTCTATAGCCGATCATGCGC
CTTGTCTACACAGAGAGATTTTCTCCAGGAGCAGGTCAACACCTTTGAGTTGTTCAAACTGGAAATTAGA
ACTCTAGCCCAGGCTTTGTCAACTGTAGAGGAAAAGAAGCAAGAGGAAGCCAAGATGAAAAAGAAAACAT
TCAAAGGATTGATACGTATATTTCGGAAAGGTGTTATTGCTGTTTTGGCAGCAAACAGACTCAAGATTTT
GGGCCAATCATGTGCCTCTCTTTTTACCTGGATGGAGAGTTTCAAAGAAGGCATAGGCATGTTAGTGTGC
ACAGGAGAGCCCCAAGACAAGCATAAATTTCCAAAACATCAAAAGGAGCAGTTGCGTTGTTTACAAGCGC
TCAGTTGGCTCACCAGTTCTGACCTTCTTGCTGCAATAATCAGTTCTATGGCTGAATTACAAGACGTCAT
TGGTAAAGCAGATCCAAATTCCAGAATTTGTGGACATTTACTCATAGGTGCAGCCAAGAATTCTTTTGCA
AAACTCATGGATAAAATTAGTCTGGTAATGGAATGTATACCTCTGCACAGTAGCAGGAGTATTACATATG
TAGAAAAAGATTCCCTGGTTCAGAGGCTGGCCCATGGACTTCATAAAGTAAACACACTGGCCCTGAAATA
TGGTTTGCGTGGCCATGTGCCCATTACGAAAAGCACAGCATCGTTGCAGAAGCAAATACTTGGATTTACA
CAAAGACTGCATGCTGCAGAAGTGGAGCGCCGCTCACTACGCTTAGAGGTCACAGAATTCAAACGAAGTG
TGAATGAAATGAAAAAGGAGCTTGACAAAGCCCAGGGTCTGCAAATGCAATTAAATGAATTTAAGCAGTC
TAAATTGATCACCCATGAGAAGTTTGAAAGTGCATGTGAAGAACTAAATAATGCATTACTTCGGGAAGAG
CAGGCACAAATGCTATTGAATGAACAGGCACAACAACTACAGGAATTGAATTATAAACTTGAATTGCACT
CCAGTGAGGAAGCTGACAAAAACCAAACTCTTGGAGAAGCTGTTAAGAGTCTCTCCGAGGCAAAGATGGA
GCTGAGAAGAAAAGATCAATCTCTGCGTCAGCTCAATAGACATCTTACCCAGCTGGAGCAGGACAAGCGT
CGACTGGAGGAGAACATCCATGATGCAGAGAGTGCCCTCCGCATGGCAGCCAAAGACAAAGAATGTGTTG
CTAATCACATGAGAGCAGTAGAAAATACGCTTCACAAGGTCAGAGATCAGATCTCGCTGTCATGGTCTGC
GGCAAGTAGGAATGACTTCACCCTACAGCTACCCAAACTGCACCTGGAGACCTTTGCAATGGAGGGGCTC
AAGGGCGGGCCAGAGGTGGTAGCATGCCAGGCTATGATTAAAAGTTTCATGGATGTCTACCAGCTTGCAA
GCACTAGAATCATGACATTAGAGAAGGAAATGACATCTCATCGAAGTCACATTGCAGCCTTGAAATCAGA
ACTTCACACAGCTTGTTTACGTGAAAATGCAAGTTTACAATCAATAGGATCACGAGACCATTCAAATCTC
TCCATTCCTTCAAGAGCTCCTCTTCCTGCTGACACAACTGGTATTGGGGATTTCTTACCATTGAAAGCTG
AACTTGATACTACTTACACTTTCTTAAAGGAGACATTTATAAATACTGTGCCCCATGCTCTGACATCATC
TCACTCCTCTCCAGTGACTATGTCTGCTAATGCCAACAGACCAACTCAGATTGGATTATGA

Translation (1326 aa):
MNLNTSSNTGDTQRLKIASLDVKQILKNETELDITDNLRKKLHWAKKEKLEITTKHNAELASYESQIAKL
RSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQK
WKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEALEKHQREKNEMESHIRETALEEFRLQE
EQWEAERRELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRV
RKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNA
QESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETCENN
VKELESILDSFTVSGQWTSGIHKDKDKPPSFSVVLERLRRTLTDYQNKLEDASNEEKACNELDSTKQKID
SHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFH
KDAEEKLTFLHTLYQHLVAGCVLIKQPEGMLDKFSWSELCAVLQENVDALIADLNRANEKIRHLEYICKN
KSDTMRELQQTQEDTFTKVAEQIKAQESCWHRQKKELELQYSELFLEVQKRAQKFQEIAEKNMEKLNHIE
KSHEQLVLENSHFKKLLSQTQREQMSLLAACALMAGALYPLYSRSCALSTQRDFLQEQVNTFELFKLEIR
TLAQALSTVEEKKQEEAKMKKKTFKGLIRIFRKGVIAVLAANRLKILGQSCASLFTWMESFKEGIGMLVC
TGEPQDKHKFPKHQKEQLRCLQALSWLTSSDLLAAIISSMAELQDVIGKADPNSRICGHLLIGAAKNSFA
KLMDKISLVMECIPLHSSRSITYVEKDSLVQRLAHGLHKVNTLALKYGLRGHVPITKSTASLQKQILGFT
QRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKLITHEKFESACEELNNALLREE
QAQMLLNEQAQQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKR
RLEENIHDAESALRMAAKDKECVANHMRAVENTLHKVRDQISLSWSAASRNDFTLQLPKLHLETFAMEGL
KGGPEVVACQAMIKSFMDVYQLASTRIMTLEKEMTSHRSHIAALKSELHTACLRENASLQSIGSRDHSNL
SIPSRAPLPADTTGIGDFLPLKAELDTTYTFLKETFINTVPHALTSSHSSPVTMSANANRPTQIGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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