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Report for CCDS4964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4964.1 Public Homo sapiens 6 LGSN 24 110 108 CCDS HistoryNCBI Gene:51557Re-query CCDS DB by CCDS ID:4964.1Re-query CCDS DB by GeneID:51557See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4964.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370657.9 ENSP00000359691.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370657.9Link to Ensembl Protein Viewer:ENSP00000359691.4Re-query CCDS DB by Nucleotide ID:ENST00000370657Re-query CCDS DB by Protein ID:ENSP00000359691
Original member Current member NCBI NM_016571.3 NP_057655.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016571.3Link to Protein Sequence:NP_057655.2Re-query CCDS DB by Nucleotide ID:NM_016571Re-query CCDS DB by Protein ID:NP_057655Link to BLAST:NP_057655.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057655.2 509 Q5TDP6-1 509 100% 0 0

Chromosomal Locations for CCDS 4964.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 63280021 63281220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63285587 63285753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63294913 63295045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63319914 63319943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGAATAATGAAGAGGACCTTCTGCAGGAGGACTCAACAAGAGATGAAGGCAATGAGACTGAAGCCAACA
GCATGAACACATTAAGAAGGACAAGGAAGAAAGTCACTAAACCATATGTTTGTTCAACTGAAGTGGGAGA
AACGGATATGTCCAATTCAAATGATTGCATGAGGGACAGCAGTCAAATTTTGACCCCACCTCAACTCTCT
TCTAGAATGAAACACATTAGACAAGCCATGGCCAAAAATCGCCTCCAGTTTGTACGATTTGAAGCAACAG
ACCTCCACGGCGTGTCCAGGTCTAAGACTATCCCTGCACACTTTTTTCAAGAGAAAGTGAGCCATGGTGT
TTGCATGCCCCGAGGTTATCTTGAAGTGATACCAAATCCAAAGGACAATGAAATGAATAACATAAGAGCC
ACATGTTTTAATAGCGACATAGTCCTAATGCCAGAGTTATCAACCTTTAGAGTTTTGCCATGGGCTGACA
GAACTGCAAGAGTGATATGTGATACCTTCACTGTGACTGGTGAGCCTCTTTTGACTTCCCCAAGGTACAT
TGCAAAGAGGCAGCTGAGCCATCTGCAGGCCTCTGGCTTTTCCCTGCTTTCTGCTTTCATCTATGATTTT
TGCATTTTTGGTGTGCCCGAAATTTTAAATTCAAAGATTATATCTTTTCCTGCTTTAACATTTTTAAATA
ACCATGATCAGCCCTTCATGCAGGAACTTGTTGATGGCTTGTATCACACTGGAGCCAATGTCGAGAGTTT
TTCCTCCTCTACCAGGCCTGGTCAGATGGAAATCTCTTTCCTGCCTGAATTTGGCATTAGCTCAGCTGAT
AATGCATTTACCCTCAGAACAGGTGTCAAAGAAGTGGCAAGGAAATATAATTACATTGCCAGCTTCTTCA
TTGAGACTGGATTTTGTGATTCAGGGATTTTGTCTCATAGTCTCTGGGATGTCGATAGGAAGAAAAACAT
GTTCTGCAGCACTTCTGGAACTGAGCAGCTCACGATCACTGGGAAAAAATGGTTGGCAGGACTCTTGAAG
CACTCTGCTGCGCTCAGCTGCCTGATGGCGCCTTCTGTTAGCTGCCGAAAGCGTTATTCCAAGGACAGGA
AAGACCTGAAGAAGAGTGTGCCTACAACATGGGGATACAATGACAACAGCTGTATATTTAATATCAAATG
TCATGGAGAGAAAGGCACCCGGATAGAAAATAAACTAGGCTCAGCAACAGCAAACCCTTACTTGGTGCTG
GCTGCAACTGTTGCTGCCGGCTTAGATGGACTTCATAGCAGTAATGAGGTCTTGGCTGGTCCAGATGAGA
GCACAGACTTTTACCAAGTGGAACCTTCTGAGATCCCTTTAAAACTAGAAGATGCCCTTGTGGCACTGGA
AGAAGATCAATGCCTGAGACAGGCTCTAGGAGAAACCTTTATTCGATATTTTGTTGCCATGAAGAAATAT
GAGTTGGAGAATGAAGAAATAGCTGCAGAGAGAAATAAATTCTTAGAGTATTTTATTTAG

Translation (509 aa):
MNNEEDLLQEDSTRDEGNETEANSMNTLRRTRKKVTKPYVCSTEVGETDMSNSNDCMRDSSQILTPPQLS
SRMKHIRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQEKVSHGVCMPRGYLEVIPNPKDNEMNNIRA
TCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVTGEPLLTSPRYIAKRQLSHLQASGFSLLSAFIYDF
CIFGVPEILNSKIISFPALTFLNNHDQPFMQELVDGLYHTGANVESFSSSTRPGQMEISFLPEFGISSAD
NAFTLRTGVKEVARKYNYIASFFIETGFCDSGILSHSLWDVDRKKNMFCSTSGTEQLTITGKKWLAGLLK
HSAALSCLMAPSVSCRKRYSKDRKDLKKSVPTTWGYNDNSCIFNIKCHGEKGTRIENKLGSATANPYLVL
AATVAAGLDGLHSSNEVLAGPDESTDFYQVEPSEIPLKLEDALVALEEDQCLRQALGETFIRYFVAMKKY
ELENEEIAAERNKFLEYFI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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