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Report for CCDS790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
790.1 Public Homo sapiens 1 STXBP3 24 110 108 CCDS HistoryNCBI Gene:6814Re-query CCDS DB by CCDS ID:790.1Re-query CCDS DB by GeneID:6814See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 790.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370008.4 ENSP00000359025.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370008.4Link to Ensembl Protein Viewer:ENSP00000359025.3Re-query CCDS DB by Nucleotide ID:ENST00000370008Re-query CCDS DB by Protein ID:ENSP00000359025
Original member Current member NCBI NM_007269.4 NP_009200.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007269.4Link to Protein Sequence:NP_009200.2Re-query CCDS DB by Nucleotide ID:NM_007269Re-query CCDS DB by Protein ID:NP_009200Link to BLAST:NP_009200.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009200.2 592 O00186 592 100% 0 0

Chromosomal Locations for CCDS 790.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 108746738 108746786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108752257 108752306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108753063 108753144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108756690 108756766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108758510 108758588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108759985 108760085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108772665 108772819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108776333 108776423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108779286 108779410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108782422 108782517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108782649 108782706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108793582 108793647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108794827 108794907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108796234 108796372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108796620 108796726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108798145 108798237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108800220 108800305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108807401 108807549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108808783 108808877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1779 nt):
ATGGCGCCGCCGGTGGCAGAGAGGGGGCTAAAGAGCGTCGTGTGGCAGAAGATAAAAGCAACAGTGTTTG
ATGACTGCAAGAAAGAAGGCGAATGGAAGATAATGCTTTTAGATGAATTTACCACTAAGCTTTTGGCATC
GTGTTGCAAAATGACAGATCTTCTAGAAGAAGGTATTACTGTTGTAGAGAATATTTATAAGAACCGTGAA
CCTGTCAGACAAATGAAAGCTCTTTATTTCATCACTCCGACATCAAAGTCTGTAGATTGTTTCTTACATG
ATTTTGCAAGTAAATCGGAGAACAAGTATAAAGCAGCATATATTTACTTCACTGACTTTTGCCCTGATAA
TCTCTTTAACAAAATTAAGGCTTCTTGCTCCAAGTCAATAAGAAGATGTAAAGAAATAAATATTTCCTTC
ATTCCACATGAATCTCAGGTGTATACTCTTGATGTACCAGATGCATTCTATTACTGTTATAGTCCAGACC
CTGGTAATGCAAAGGGAAAAGATGCCATTATGGAAACAATGGCTGACCAGATAGTTACAGTGTGTGCCAC
CTTGGATGAAAATCCCGGAGTAAGATATAAAAGTAAACCTCTAGATAATGCCAGTAAGCTTGCACAGCTT
GTTGAAAAAAAGCTTGAAGACTACTACAAGATTGATGAAAAGAGCCTAATAAAGGGTAAAACTCATTCAC
AGCTCTTAATAATTGATCGTGGCTTTGATCCTGTGTCCACTGTCCTGCATGAACTGACCTTTCAGGCAAT
GGCATATGATCTACTACCAATTGAGAATGATACATACAAATATAAAACAGATGGAAAAGAAAAGGAGGCC
ATCCTTGAAGAAGAAGATGACCTCTGGGTTAGAATTCGACATCGACATATTGCGGTTGTGTTAGAGGAAA
TTCCCAAGCTTATGAAAGAAATTTCATCAACAAAGAAAGCAACAGAAGGAAAGACATCACTTAGTGCTCT
TACCCAGCTGATGAAAAAGATGCCCCATTTCCGAAAACAGATTACTAAGCAAGTTGTCCATCTTAACTTA
GCAGAAGATTGCATGAATAAGTTCAAGCTTAATATAGAAAAGCTCTGCAAAACTGAACAGGACCTGGCAC
TTGGAACTGATGCAGAAGGACAGAAGGTGAAAGATTCCATGCGAGTACTCCTTCCAGTTCTACTCAACAA
AAATCATGATAATTGTGATAAAATAAGAGCAATTCTACTTTATATCTTCAGTATTAATGGAACTACGGAA
GAAAATTTGGACAGGTTGATCCAGAATGTAAAGATAGAAAATGAGAGTGACATGATTCGTAACTGGAGTT
ACCTTGGTGTTCCCATTGTTCCCCAATCTCAACAAGGCAAACCGTTAAGAAAGGATCGGTCTGCAGAAGA
AACTTTTCAGCTCTCTCGGTGGACACCTTTTATCAAAGATATTATGGAGGATGCTATTGATAATAGATTA
GATTCAAAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAATGGTTCAGGAGCTGTAAGTGCTC
GCCAGAAACCCAGAGCTAATTATTTAGAAGACCGAAAAAATGGGTCAAAGCTGATTGTTTTTGTAATTGG
AGGGATCACATACTCTGAAGTGCGTTGTGCTTATGAAGTTTCTCAGGCACATAAATCCTGTGAAGTTATT
ATTGGTTCTACACATGTTTTAACACCCAAAAAGCTGTTGGATGATATAAAGATGCTGAATAAACCCAAGG
ATAAAGTCTCCTTAATTAAAGATGAATAG

Translation (592 aa):
MAPPVAERGLKSVVWQKIKATVFDDCKKEGEWKIMLLDEFTTKLLASCCKMTDLLEEGITVVENIYKNRE
PVRQMKALYFITPTSKSVDCFLHDFASKSENKYKAAYIYFTDFCPDNLFNKIKASCSKSIRRCKEINISF
IPHESQVYTLDVPDAFYYCYSPDPGNAKGKDAIMETMADQIVTVCATLDENPGVRYKSKPLDNASKLAQL
VEKKLEDYYKIDEKSLIKGKTHSQLLIIDRGFDPVSTVLHELTFQAMAYDLLPIENDTYKYKTDGKEKEA
ILEEEDDLWVRIRHRHIAVVLEEIPKLMKEISSTKKATEGKTSLSALTQLMKKMPHFRKQITKQVVHLNL
AEDCMNKFKLNIEKLCKTEQDLALGTDAEGQKVKDSMRVLLPVLLNKNHDNCDKIRAILLYIFSINGTTE
ENLDRLIQNVKIENESDMIRNWSYLGVPIVPQSQQGKPLRKDRSAEETFQLSRWTPFIKDIMEDAIDNRL
DSKEWPYCSQCPAVWNGSGAVSARQKPRANYLEDRKNGSKLIVFVIGGITYSEVRCAYEVSQAHKSCEVI
IGSTHVLTPKKLLDDIKMLNKPKDKVSLIKDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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