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Report for CCDS854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
854.1 Public Homo sapiens 1 RHOC 24 110 108 CCDS HistoryNCBI Gene:389Re-query CCDS DB by CCDS ID:854.1Re-query CCDS DB by GeneID:389See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 854.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000285735.6 ENSP00000285735.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000285735.6Link to Ensembl Protein Viewer:ENSP00000285735.2Re-query CCDS DB by Nucleotide ID:ENST00000285735Re-query CCDS DB by Protein ID:ENSP00000285735
Original member Current member EBI ENST00000339083.12 ENSP00000345236.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339083.12Link to Ensembl Protein Viewer:ENSP00000345236.8Re-query CCDS DB by Nucleotide ID:ENST00000339083Re-query CCDS DB by Protein ID:ENSP00000345236
Original member Current member EBI ENST00000369632.6 ENSP00000358646.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369632.6Link to Ensembl Protein Viewer:ENSP00000358646.2Re-query CCDS DB by Nucleotide ID:ENST00000369632Re-query CCDS DB by Protein ID:ENSP00000358646
Original member Current member EBI ENST00000369633.6 ENSP00000358647.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369633.6Link to Ensembl Protein Viewer:ENSP00000358647.2Re-query CCDS DB by Nucleotide ID:ENST00000369633Re-query CCDS DB by Protein ID:ENSP00000358647
Original member Current member EBI ENST00000369637.5 ENSP00000358651.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369637.5Link to Ensembl Protein Viewer:ENSP00000358651.1Re-query CCDS DB by Nucleotide ID:ENST00000369637Re-query CCDS DB by Protein ID:ENSP00000358651
Original member Current member EBI ENST00000369638.6 ENSP00000358652.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369638.6Link to Ensembl Protein Viewer:ENSP00000358652.2Re-query CCDS DB by Nucleotide ID:ENST00000369638Re-query CCDS DB by Protein ID:ENSP00000358652
Original member Current member EBI ENST00000369642.7 ENSP00000358656.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369642.7Link to Ensembl Protein Viewer:ENSP00000358656.3Re-query CCDS DB by Nucleotide ID:ENST00000369642Re-query CCDS DB by Protein ID:ENSP00000358656
Original member Current member NCBI NM_001042678.2 NP_001036143.1 Accepted alive Link to Nucleotide Sequence:NM_001042678.2Link to Protein Sequence:NP_001036143.1Re-query CCDS DB by Nucleotide ID:NM_001042678Re-query CCDS DB by Protein ID:NP_001036143Link to BLAST:NP_001036143.1
Original member Current member NCBI NM_001042679.2 NP_001036144.1 Accepted alive Link to Nucleotide Sequence:NM_001042679.2Link to Protein Sequence:NP_001036144.1Re-query CCDS DB by Nucleotide ID:NM_001042679Re-query CCDS DB by Protein ID:NP_001036144Link to BLAST:NP_001036144.1
Original member Current member NCBI NM_175744.5 NP_786886.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175744.5Link to Protein Sequence:NP_786886.1Re-query CCDS DB by Nucleotide ID:NM_175744Re-query CCDS DB by Protein ID:NP_786886Link to BLAST:NP_786886.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036143.1 193 P08134 193 100% 0 0
NP_001036144.1 193 P08134 193 100% 0 0
NP_786886.1 193 P08134 193 100% 0 0

Chromosomal Locations for CCDS 854.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 112701540 112701713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112702563 112702693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112702999 112703119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112703644 112703799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGCTGCAATCCGAAAGAAGCTGGTGATCGTTGGGGATGGTGCCTGTGGGAAGACCTGCCTCCTCATCG
TCTTCAGCAAGGATCAGTTTCCGGAGGTCTACGTCCCTACTGTCTTTGAGAACTATATTGCGGACATTGA
GGTGGACGGCAAGCAGGTGGAGCTGGCTCTGTGGGACACAGCAGGGCAGGAAGACTATGATCGACTGCGG
CCTCTCTCCTACCCGGACACTGATGTCATCCTCATGTGCTTCTCCATCGACAGCCCTGACAGCCTGGAAA
ACATTCCTGAGAAGTGGACCCCAGAGGTGAAGCACTTCTGCCCCAACGTGCCCATCATCCTGGTGGGGAA
TAAGAAGGACCTGAGGCAAGACGAGCACACCAGGAGAGAGCTGGCCAAGATGAAGCAGGAGCCCGTTCGG
TCTGAGGAAGGCCGGGACATGGCGAACCGGATCAGTGCCTTTGGCTACCTTGAGTGCTCAGCCAAGACCA
AGGAGGGAGTGCGGGAGGTGTTTGAGATGGCCACTCGGGCTGGCCTCCAGGTCCGCAAGAACAAGCGTCG
GAGGGGCTGTCCCATTCTCTGA

Translation (193 aa):
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR
PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVR
SEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKRRRGCPIL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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