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Report for CCDS7687.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7687.1 Public Homo sapiens 10 SYCE1 24 110 108 CCDS HistoryNCBI Gene:93426Re-query CCDS DB by CCDS ID:7687.1Re-query CCDS DB by GeneID:93426See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7687.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368517.7 ENSP00000357503.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368517.7Link to Ensembl Protein Viewer:ENSP00000357503.3Re-query CCDS DB by Nucleotide ID:ENST00000368517Re-query CCDS DB by Protein ID:ENSP00000357503
Original member Current member NCBI NM_130784.4 NP_570140.1 Accepted alive Link to Nucleotide Sequence:NM_130784.4Link to Protein Sequence:NP_570140.1Re-query CCDS DB by Nucleotide ID:NM_130784Re-query CCDS DB by Protein ID:NP_570140Link to BLAST:NP_570140.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570140.1 282 Q8N0S2-2 282 100% 0 0

Chromosomal Locations for CCDS 7687.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 133554290 133554328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133555351 133555438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133555597 133555707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133555780 133555903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133555981 133556047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133556759 133556822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133557067 133557156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133557864 133557918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133558167 133558214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133558877 133558951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133559301 133559360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133560091 133560118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGGAAATGGTGCAAAAGCTGCAGAAAGTGGGAAGCCTAGAGCCCCGAGTTGAGGTCCTGATTAACCGGA
TTAATGAGGTCCAGCAAGCAAAAAAGAAAGCCAATAAAGACCTAGGAGAGGCCCGGACCATCTGTGAGGC
CCTGCAGAAGGAACTGGACTCGCTGCATGGAGAGAAAGTACACCTGAAGGAGATCTTGAGCAAAAAACAA
GAGACCCTGAGGATCCTCCGGCTGCATTGCCAGGAAAAGGAAAGTGAGGCACACAGGAAGCACACCATGT
TGCAGGAGTGCAAGGAGAGAATTTCTGCCCTGAACTTGCAGATTGAAGAAGAGAAGAACAAACAGAGACA
GCTGAGGTTGGCATTCGAGGAACAGCTGGAAGATCTGATGGGCCAGCACAAGGACCTCTGGGACTTCCAC
ATGCCAGAGCGGCTGGCAAAGGAGATTTGTGCCCTGGACAGCAGCAAGGAGCAGCTGCTCAAGGAAGAGA
AGCTGGTCAAGGCGACACTGGAAGACGTGAAGCATCAGCTGTGCTCCCTGTGTGGGGCTGAGGGCCCCTC
CACCCTTGATGAGGGACTCTTTCTCCGCAGCCAGGAGGCTGCAGCCACAGTGCAGCTGTTTCAGGAAGAG
CACAGGAAGGCTGAGGAGCTCCTAGCAGCTGCTGCCCAGCGCCACCAGCAGCTGCAGCAGAAGTGCCAAC
AACAGCAGCAGAAGCGGCAGAGGCTGAAGGAAGAGCTGGAAAAGCATGGAATGCAAGTCCCTGCCCAAGC
CCAGAGCACACAAGAGGAAGAGGCTGGCCCAGGAGATGTGGCTCCCAGACCAGGTAGACCAGTGACATGG
TGGAGTTGA

Translation (282 aa):
MEMVQKLQKVGSLEPRVEVLINRINEVQQAKKKANKDLGEARTICEALQKELDSLHGEKVHLKEILSKKQ
ETLRILRLHCQEKESEAHRKHTMLQECKERISALNLQIEEEKNKQRQLRLAFEEQLEDLMGQHKDLWDFH
MPERLAKEICALDSSKEQLLKEEKLVKATLEDVKHQLCSLCGAEGPSTLDEGLFLRSQEAAATVQLFQEE
HRKAEELLAAAAQRHQQLQQKCQQQQQKRQRLKEELEKHGMQVPAQAQSTQEEEAGPGDVAPRPGRPVTW
WS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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