NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7595.1 Public Homo sapiens 10 PNLIPRP1 24 110 108 CCDS HistoryNCBI Gene:5407Re-query CCDS DB by CCDS ID:7595.1Re-query CCDS DB by GeneID:5407See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7595.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358834.9 ENSP00000351695.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358834.9Link to Ensembl Protein Viewer:ENSP00000351695.4Re-query CCDS DB by Nucleotide ID:ENST00000358834Re-query CCDS DB by Protein ID:ENSP00000351695
Original member Current member EBI ENST00000528052.5 ENSP00000433933.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000528052.5Link to Ensembl Protein Viewer:ENSP00000433933.1Re-query CCDS DB by Nucleotide ID:ENST00000528052Re-query CCDS DB by Protein ID:ENSP00000433933
Original member Current member NCBI NM_001303135.1 NP_001290064.1 Accepted alive Link to Nucleotide Sequence:NM_001303135.1Link to Protein Sequence:NP_001290064.1Re-query CCDS DB by Nucleotide ID:NM_001303135Re-query CCDS DB by Protein ID:NP_001290064Link to BLAST:NP_001290064.1
Original member Current member NCBI NM_006229.4 NP_006220.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006229.4Link to Protein Sequence:NP_006220.1Re-query CCDS DB by Nucleotide ID:NM_006229Re-query CCDS DB by Protein ID:NP_006220Link to BLAST:NP_006220.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290064.1 467 P54315-1 467 100% 0 0
NP_006220.1 467 P54315-1 467 100% 0 0

Chromosomal Locations for CCDS 7595.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 116591130 116591178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116591771 116591925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116592416 116592541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116594730 116594864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116596214 116596322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116597828 116597947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116598047 116598166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116600047 116600165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116601072 116601201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116604030 116604138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116605386 116605553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116609053 116609116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGCTGATCTTCTGGACAATCACACTTTTCCTGCTGGGAGCAGCCAAAGGAAAAGAAGTTTGCTATGAGG
ACCTCGGGTGCTTTTCTGACACTGAGCCCTGGGGCGGGACAGCAATCAGGCCCCTGAAAATTCTCCCCTG
GAGCCCTGAGAAGATCGGCACCCGCTTCCTGCTGTACACCAATGAAAACCCAAACAACTTTCAAATTCTC
CTCCTCTCTGATCCATCAACAATTGAGGCATCAAATTTTCAAATGGACAGAAAGACCCGGTTCATCATCC
ATGGCTTCATAGACAAAGGAGATGAGAGCTGGGTGACAGACATGTGCAAGAAACTGTTCGAGGTGGAGGA
GGTGAACTGCATCTGCGTGGACTGGAAGAAGGGCTCCCAAGCCACCTACACACAGGCTGCCAACAACGTG
CGAGTGGTGGGCGCCCAGGTGGCCCAGATGCTCGACATCCTCTTGACAGAGTATAGCTACCCCCCTTCCA
AAGTTCACCTCATTGGCCACAGCCTGGGAGCCCACGTGGCTGGAGAGGCAGGAAGCAAGACTCCAGGCCT
GAGCAGGATTACAGGGTTGGATCCTGTAGAAGCAAGTTTCGAGAGTACTCCTGAAGAGGTGCGACTTGAT
CCCTCTGATGCTGACTTTGTTGATGTGATTCACACGGATGCAGCTCCCCTGATCCCATTCTTGGGTTTTG
GAACGAACCAACAGATGGGTCATCTTGACTTCTTCCCCAATGGAGGAGAGAGCATGCCGGGATGCAAGAA
GAATGCCCTGTCTCAGATCGTGGATCTAGATGGCATCTGGGCGGGAACCCGGGACTTTGTGGCTTGCAAT
CACCTAAGAAGCTACAAGTATTACTTGGAAAGCATCCTCAATCCCGATGGGTTTGCTGCATATCCCTGCA
CTTCCTACAAGTCCTTTGAGTCTGACAAGTGCTTCCCGTGTCCAGATCAAGGATGCCCACAGATGGGTCA
CTATGCTGATAAATTTGCTGGCAGGACAAGTGAAGAGCAGCAGAAATTCTTCTTGAACACAGGAGAGGCT
AGCAATTTCGCTCGCTGGAGATATGGGGTTTCCATCACACTGTCTGGAAGAACAGCCACTGGTCAGATCA
AAGTTGCTTTGTTTGGAAATAAGGGAAACACTCACCAGTACAGTATCTTCAGGGGGATTCTCAAACCAGG
CTCAACCCATTCCTATGAGTTTGATGCAAAGCTGGATGTTGGAACAATTGAGAAAGTCAAGTTTCTTTGG
AATAACAATGTGATAAATCCAACCCTCCCCAAAGTGGGTGCCACCAAGATCACTGTGCAAAAGGGAGAAG
AGAAGACAGTGTACAACTTCTGTAGCGAAGACACAGTGCGGGAAGACACGCTGCTCACCCTCACGCCCTG
CTAA

Translation (467 aa):
MLIFWTITLFLLGAAKGKEVCYEDLGCFSDTEPWGGTAIRPLKILPWSPEKIGTRFLLYTNENPNNFQIL
LLSDPSTIEASNFQMDRKTRFIIHGFIDKGDESWVTDMCKKLFEVEEVNCICVDWKKGSQATYTQAANNV
RVVGAQVAQMLDILLTEYSYPPSKVHLIGHSLGAHVAGEAGSKTPGLSRITGLDPVEASFESTPEEVRLD
PSDADFVDVIHTDAAPLIPFLGFGTNQQMGHLDFFPNGGESMPGCKKNALSQIVDLDGIWAGTRDFVACN
HLRSYKYYLESILNPDGFAAYPCTSYKSFESDKCFPCPDQGCPQMGHYADKFAGRTSEEQQKFFLNTGEA
SNFARWRYGVSITLSGRTATGQIKVALFGNKGNTHQYSIFRGILKPGSTHSYEFDAKLDVGTIEKVKFLW
NNNVINPTLPKVGATKITVQKGEEKTVYNFCSEDTVREDTLLTLTPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH