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Report for CCDS56456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56456.1 Public Homo sapiens 6 KATNA1 24 110 108 CCDS HistoryNCBI Gene:11104Re-query CCDS DB by CCDS ID:56456.1Re-query CCDS DB by GeneID:11104See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56456.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335643.12 ENSP00000335180.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000335643.12Link to Ensembl Protein Viewer:ENSP00000335180.8Re-query CCDS DB by Nucleotide ID:ENST00000335643Re-query CCDS DB by Protein ID:ENSP00000335180
Original member Current member NCBI NM_001204076.2 NP_001191005.1 Accepted alive Link to Nucleotide Sequence:NM_001204076.2Link to Protein Sequence:NP_001191005.1Re-query CCDS DB by Nucleotide ID:NM_001204076Re-query CCDS DB by Protein ID:NP_001191005Link to BLAST:NP_001191005.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191005.1 311 O75449-2 311 100% 0 0

Chromosomal Locations for CCDS 56456.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 149595221 149595234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149597507 149597641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149598224 149598350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149601594 149601752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149623103 149623283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149632759 149632916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149638386 149638547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGAGTCTTCTTATGATTAGTGAGAATGTAAAATTGGCTCGTGAATATGCATTGCTGGGAAACTATGACT
CTGCGATGGTCTATTATCAGGGAGTTCTTGACCAAATGAACAAGTATCTGTACTCAGTCAAAGATACATA
CCTCCAGCAGAAATGGCAACAGGTTTGGCAGGAAATAAATGTGGAAGCTAAACATGTTAAAGATATCATG
AAAACACTAGAGAGCTTTAAACTGGACAGCACTCCCTTGAAAGCGGCACAGCATGACCTTCCAGCTTCTG
AGGGAGAAGTCTGGTCCATGCCTGTACCTGTTGAACGAAGACCCTCACCAGGACCTAGAAAACGCCAATC
TTCTCAGTACAGTGACCCTAAATCACATGGTAATCGTCCAAGTACAACTGTCAGAGTTCACCGTTCATCT
GCACAGAATGTTCACAATGACAGAGGGAAAGCTGTTCGTTGTCGTGAAAAGAAAGAACAGAATAAAGGAA
GAGAGGAAAAGGGAGTACTGATGGTCGGCCCACCTGGCACGGGGAAGACGCTCCTTGCTAAAGCAGTAGC
TACAGAATGCAAGACAACATTCTTCAATGTCTCTTCATCAACTTTGACTTCCAAATACAGAGGAGAATCT
GAGAAGCTTGTTCGTCTTCTGTTTGAAATGGCTCGATTTTATTCTCCAGCCACCATATTTATTGATGAGA
TAGACTCCATCTGTAGTCGCCGAGGGACTTCTGAAGAACATGAAGCAAGCAGAAGGGTGAAAGCGGAGCT
GCTGGTTCAGATGGATGGTGTTGGAGGTACTTCTGAAAATGATGACCCTTCCAAAATGGTTATGGTTCTG
GCAGCTACTAATTTTCCCTGGGATATAGATGAGGCTTTAAGACGACGCCTTGAGAAACGAATCTATATTC
CTTTGCCGTCAGGGATGCGTCCTTGA

Translation (311 aa):
MSLLMISENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTYLQQKWQQVWQEINVEAKHVKDIM
KTLESFKLDSTPLKAAQHDLPASEGEVWSMPVPVERRPSPGPRKRQSSQYSDPKSHGNRPSTTVRVHRSS
AQNVHNDRGKAVRCREKKEQNKGREEKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGES
EKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVL
AATNFPWDIDEALRRRLEKRIYIPLPSGMRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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