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Report for CCDS2953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2953.1 Public Homo sapiens 3 RETNLB 24 110 108 CCDS HistoryNCBI Gene:84666Re-query CCDS DB by CCDS ID:2953.1Re-query CCDS DB by GeneID:84666See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2953.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295755.7 ENSP00000295755.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295755.7Link to Ensembl Protein Viewer:ENSP00000295755.6Re-query CCDS DB by Nucleotide ID:ENST00000295755Re-query CCDS DB by Protein ID:ENSP00000295755
Original member Current member NCBI NM_032579.3 NP_115968.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032579.3Link to Protein Sequence:NP_115968.1Re-query CCDS DB by Nucleotide ID:NM_032579Re-query CCDS DB by Protein ID:NP_115968Link to BLAST:NP_115968.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115968.1 111 Q9BQ08 111 100% 0 0

Chromosomal Locations for CCDS 2953.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108755778 108755905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108756508 108756588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108757059 108757185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (336 nt):
ATGGGGCCGTCCTCTTGCCTCCTTCTCATCCTAATCCCCCTTCTCCAGCTGATCAACCCGGGGAGTACTC
AGTGTTCCTTAGACTCCGTTATGGATAAGAAGATCAAGGATGTTCTCAACAGTCTAGAGTACAGTCCCTC
TCCTATAAGCAAGAAGCTCTCGTGTGCTAGTGTCAAAAGCCAAGGCAGACCGTCCTCCTGCCCTGCTGGG
ATGGCTGTCACTGGCTGTGCTTGTGGCTATGGCTGTGGTTCGTGGGATGTTCAGCTGGAAACCACCTGCC
ACTGCCAGTGCAGTGTGGTGGACTGGACCACTGCCCGCTGCTGCCACCTGACCTGA

Translation (111 aa):
MGPSSCLLLILIPLLQLINPGSTQCSLDSVMDKKIKDVLNSLEYSPSPISKKLSCASVKSQGRPSSCPAG
MAVTGCACGYGCGSWDVQLETTCHCQCSVVDWTTARCCHLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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