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Report for CCDS1524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1524.1 Public Homo sapiens 1 C1orf115 24 110 108 CCDS HistoryNCBI Gene:79762Re-query CCDS DB by CCDS ID:1524.1Re-query CCDS DB by GeneID:79762See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1524.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294889.6 ENSP00000294889.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000294889.6Link to Ensembl Protein Viewer:ENSP00000294889.5Re-query CCDS DB by Nucleotide ID:ENST00000294889Re-query CCDS DB by Protein ID:ENSP00000294889
Original member Current member NCBI NM_024709.5 NP_078985.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024709.5Link to Protein Sequence:NP_078985.3Re-query CCDS DB by Nucleotide ID:NM_024709Re-query CCDS DB by Protein ID:NP_078985Link to BLAST:NP_078985.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078985.3 142 Q9H7X2 142 100% 0 0

Chromosomal Locations for CCDS 1524.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 220690403 220690711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 220696612 220696731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGACGGTGGGAGCCAGGCTCCGAAGCAAGGCGGAGAGCAGCCTCCTGCGCCGCGGGCCCCGAGGGCGAG
GGCGAACCGAGGGGGACGAGGAGGCGGCCGCCATCCTGGAGCACCTGGAGTACGCGGACGAGGCGGAGGC
GGCGGCCGAGAGCGGGACGAGCGCGGCGGACGAGCGGGGCCCGGGGACCCGGGGCGCGCGGAGGGTGCAC
TTCGCCCTCCTGCCCGAGCGCTACGAGCCACTGGAGGAGCCGGCGCCGAGCGAGCAGCCCAGGAAGAGGT
ACCGGAGGAAGCTGAAGAAGTACGGCAAGAATGTCGGGAAGGTCATCATCAAAGGATGCCGCTACGTGGT
CATCGGCCTGCAAGGCTTCGCTGCAGCCTACTCCGCCCCGTTTGCGGTAGCCACCAGCGTGGTATCCTTC
GTGCGCTAA

Translation (142 aa):
MTVGARLRSKAESSLLRRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERGPGTRGARRVH
FALLPERYEPLEEPAPSEQPRKRYRRKLKKYGKNVGKVIIKGCRYVVIGLQGFAAAYSAPFAVATSVVSF
VR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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