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Report for CCDS2739.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2739.1 Public Homo sapiens 3 CCR5 24 110 108 CCDS HistoryNCBI Gene:1234Re-query CCDS DB by CCDS ID:2739.1Re-query CCDS DB by GeneID:1234See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 2739.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292303.5 ENSP00000292303.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000292303.5Link to Ensembl Protein Viewer:ENSP00000292303.4Re-query CCDS DB by Nucleotide ID:ENST00000292303Re-query CCDS DB by Protein ID:ENSP00000292303
Original member Current member EBI ENST00000445772.1 ENSP00000404881.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445772.1Link to Ensembl Protein Viewer:ENSP00000404881.1Re-query CCDS DB by Nucleotide ID:ENST00000445772Re-query CCDS DB by Protein ID:ENSP00000404881
Original member Current member NCBI NM_000579.4 NP_000570.1 Accepted alive Link to Nucleotide Sequence:NM_000579.4Link to Protein Sequence:NP_000570.1Re-query CCDS DB by Nucleotide ID:NM_000579Re-query CCDS DB by Protein ID:NP_000570Link to BLAST:NP_000570.1
Original member Current member NCBI NM_001100168.2 NP_001093638.1 Accepted alive Link to Nucleotide Sequence:NM_001100168.2Link to Protein Sequence:NP_001093638.1Re-query CCDS DB by Nucleotide ID:NM_001100168Re-query CCDS DB by Protein ID:NP_001093638Link to BLAST:NP_001093638.1
Original member Current member NCBI NM_001394783.1 NP_001381712.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001394783.1Link to Protein Sequence:NP_001381712.1Re-query CCDS DB by Nucleotide ID:NM_001394783Re-query CCDS DB by Protein ID:NP_001381712Link to BLAST:NP_001381712.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000570.1 352 P51681 352 100% 0 0
NP_001093638.1 352 P51681 352 100% 0 0
NP_001381712.1 352 P51681 352 100% 0 0

Chromosomal Locations for CCDS 2739.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 46372903 46373961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGGATTATCAAGTGTCAAGTCCAATCTATGACATCAATTATTATACATCGGAGCCCTGCCAAAAAATCA
ATGTGAAGCAAATCGCAGCCCGCCTCCTGCCTCCGCTCTACTCACTGGTGTTCATCTTTGGTTTTGTGGG
CAACATGCTGGTCATCCTCATCCTGATAAACTGCAAAAGGCTGAAGAGCATGACTGACATCTACCTGCTC
AACCTGGCCATCTCTGACCTGTTTTTCCTTCTTACTGTCCCCTTCTGGGCTCACTATGCTGCCGCCCAGT
GGGACTTTGGAAATACAATGTGTCAACTCTTGACAGGGCTCTATTTTATAGGCTTCTTCTCTGGAATCTT
CTTCATCATCCTCCTGACAATCGATAGGTACCTGGCTGTCGTCCATGCTGTGTTTGCTTTAAAAGCCAGG
ACGGTCACCTTTGGGGTGGTGACAAGTGTGATCACTTGGGTGGTGGCTGTGTTTGCGTCTCTCCCAGGAA
TCATCTTTACCAGATCTCAAAAAGAAGGTCTTCATTACACCTGCAGCTCTCATTTTCCATACAGTCAGTA
TCAATTCTGGAAGAATTTCCAGACATTAAAGATAGTCATCTTGGGGCTGGTCCTGCCGCTGCTTGTCATG
GTCATCTGCTACTCGGGAATCCTAAAAACTCTGCTTCGGTGTCGAAATGAGAAGAAGAGGCACAGGGCTG
TGAGGCTTATCTTCACCATCATGATTGTTTATTTTCTCTTCTGGGCTCCCTACAACATTGTCCTTCTCCT
GAACACCTTCCAGGAATTCTTTGGCCTGAATAATTGCAGTAGCTCTAACAGGTTGGACCAAGCTATGCAG
GTGACAGAGACTCTTGGGATGACGCACTGCTGCATCAACCCCATCATCTATGCCTTTGTCGGGGAGAAGT
TCAGAAACTACCTCTTAGTCTTCTTCCAAAAGCACATTGCCAAACGCTTCTGCAAATGCTGTTCTATTTT
CCAGCAAGAGGCTCCCGAGCGAGCAAGCTCAGTTTACACCCGATCCACTGGGGAGCAGGAAATATCTGTG
GGCTTGTGA

Translation (352 aa):
MDYQVSSPIYDINYYTSEPCQKINVKQIAARLLPPLYSLVFIFGFVGNMLVILILINCKRLKSMTDIYLL
NLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQLLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVFALKAR
TVTFGVVTSVITWVVAVFASLPGIIFTRSQKEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVM
VICYSGILKTLLRCRNEKKRHRAVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQ
VTETLGMTHCCINPIIYAFVGEKFRNYLLVFFQKHIAKRFCKCCSIFQQEAPERASSVYTRSTGEQEISV
GL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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