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Report for CCDS2703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2703.1 Public Homo sapiens 3 KLHL40 24 110 108 CCDS HistoryNCBI Gene:131377Re-query CCDS DB by CCDS ID:2703.1Re-query CCDS DB by GeneID:131377See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2703.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000287777.5 ENSP00000287777.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000287777.5Link to Ensembl Protein Viewer:ENSP00000287777.4Re-query CCDS DB by Nucleotide ID:ENST00000287777Re-query CCDS DB by Protein ID:ENSP00000287777
Original member Current member NCBI NM_152393.4 NP_689606.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152393.4Link to Protein Sequence:NP_689606.2Re-query CCDS DB by Nucleotide ID:NM_152393Re-query CCDS DB by Protein ID:NP_689606Link to BLAST:NP_689606.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689606.2 621 Q2TBA0-1 621 100% 0 0

Chromosomal Locations for CCDS 2703.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 42685619 42686770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42688142 42688302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42688610 42688717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42688869 42689054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42690859 42691005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42691882 42691993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1866 nt):
ATGGCGCTGGGCTTGGAGCAGGCGGAGGAGCAGCGGTTGTACCAGCAGACGCTCCTGCAAGACGGGCTCA
AAGACATGCTGGACCATGGCAAGTTCCTCGACTGTGTGGTGCGGGCGGGCGAGCGCGAGTTCCCGTGCCA
TCGCCTGGTGCTGGCCGCCTGCAGCCCCTACTTCCGGGCGCGCTTTCTAGCCGAGCCGGAGCGCGCGGGC
GAGCTGCACCTGGAGGAGGTGTCCCCGGACGTGGTGGCCCAGGTGCTGCACTACCTGTACACATCAGAGA
TCGCGCTGGATGAGGCGAGCGTGCAGGATTTGTTCGCCGCGGCACACCGCTTCCAGATCCCTTCCATCTT
CACCATCTGCGTGTCCTTCCTGCAGAAGCGCCTGTGCCTCTCCAACTGCTTGGCCGTCTTCCGTCTCGGC
CTCCTGCTCGACTGCGCGCGTCTCGCCGTGGCTGCCCGCGACTTCATCTGCGCTCACTTCACGCTGGTGG
CGCGCGACGCTGACTTCCTCGGACTCTCGGCCGACGAGCTCATCGCCATCATCTCCAGCGACGGCCTTAA
CGTGGAGAAGGAGGAGGCAGTGTTCGAGGCGGTGATGCGGTGGGCGGGTAGCGGCGACGCCGAGGCGCAG
GCTGAGCGCCAGCGCGCGCTGCCCACCGTCTTCGAGAGCGTGCGCTGCCGCTTGCTGCCGCGCGCCTTTC
TGGAAAGCCGCGTGGAGCGCCACCCTCTCGTGCGTGCCCAGCCCGAGTTGCTGCGCAAGGTGCAGATGGT
GAAGGATGCACACGAGGGCCGCATCACCACGCTGCGGAAGAAAAAGAAGGGGAAGGATGGAGCCGGGGCC
AAGGAGGCTGATAAGGGCACAAGCAAAGCCAAAGCAGAGGAGGATGAGGAGGCCGAACGTATCCTTCCTG
GGATCCTCAATGACACCCTGCGCTTCGGCATGTTCCTGCAGGATCTCATCTTCATGATCAGTGAGGAGGG
CGCTGTGGCCTACGATCCAGCAGCCAACGAGTGCTACTGTGCTTCCCTCTCCAACCAGGTCCCCAAGAAC
CACGTCAGCCTGGTTACCAAGGAGAACCAGGTCTTCGTGGCTGGAGGCCTCTTCTACAACGAAGACAACA
AAGAGGACCCCATGAGCGCATACTTCCTGCAGTTTGACCATCTGGACTCAGAGTGGCTGGGGATGCCACC
GCTGCCCTCGCCCCGCTGCCTCTTTGGCCTGGGAGAAGCTCTCAACTCCATCTACGTGGTCGGTGGCAGA
GAGATCAAGGACGGCGAGCGCTGCCTGGACTCGGTCATGTGCTACGACAGGCTGTCATTCAAATGGGGTG
AATCGGACCCGCTGCCTTACGTGGTGTATGGCCACACAGTGCTCTCCCACATGGACCTTGTCTACGTAAT
TGGCGGCAAAGGCAGTGACAGGAAGTGCCTGAACAAGATGTGCGTCTATGACCCCAAGAAGTTTGAGTGG
AAGGAGCTGGCACCCATGCAGACCGCCCGCTCACTCTTTGGGGCCACTGTCCATGATGGCCGCATTATCG
TGGCAGCTGGGGTCACCGACACAGGGCTGACCAGTTCTGCCGAAGTGTACAGCATCACAGACAACAAGTG
GGCACCCTTCGAGGCCTTCCCACAGGAGCGTAGCTCACTCAGCCTGGTCAGCCTGGTGGGTACCCTCTAT
GCCATTGGTGGCTTTGCCACACTGGAGACGGAGTCTGGAGAGCTGGTTCCCACAGAGCTCAATGACATCT
GGAGGTATAACGAGGAGGAGAAGAAATGGGAGGGTGTCCTGCGGGAGATCGCCTATGCAGCAGGTGCCAC
CTTCCTACCAGTGCGGCTCAATGTGCTGTGCCTGACTAAGATGTGA

Translation (621 aa):
MALGLEQAEEQRLYQQTLLQDGLKDMLDHGKFLDCVVRAGEREFPCHRLVLAACSPYFRARFLAEPERAG
ELHLEEVSPDVVAQVLHYLYTSEIALDEASVQDLFAAAHRFQIPSIFTICVSFLQKRLCLSNCLAVFRLG
LLLDCARLAVAARDFICAHFTLVARDADFLGLSADELIAIISSDGLNVEKEEAVFEAVMRWAGSGDAEAQ
AERQRALPTVFESVRCRLLPRAFLESRVERHPLVRAQPELLRKVQMVKDAHEGRITTLRKKKKGKDGAGA
KEADKGTSKAKAEEDEEAERILPGILNDTLRFGMFLQDLIFMISEEGAVAYDPAANECYCASLSNQVPKN
HVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGR
EIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW
KELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLY
AIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREIAYAAGATFLPVRLNVLCLTKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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