NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8364.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8364.1 Public Homo sapiens 11 HTR3B 24 110 108 CCDS HistoryNCBI Gene:9177Re-query CCDS DB by CCDS ID:8364.1Re-query CCDS DB by GeneID:9177See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8364.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260191.8 ENSP00000260191.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000260191.8Link to Ensembl Protein Viewer:ENSP00000260191.2Re-query CCDS DB by Nucleotide ID:ENST00000260191Re-query CCDS DB by Protein ID:ENSP00000260191
Original member Current member NCBI NM_006028.5 NP_006019.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006028.5Link to Protein Sequence:NP_006019.1Re-query CCDS DB by Nucleotide ID:NM_006028Re-query CCDS DB by Protein ID:NP_006019Link to BLAST:NP_006019.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006019.1 441 O95264-1 441 100% 0 0

Chromosomal Locations for CCDS 8364.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 113904934 113904985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113909295 113909455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113931384 113931428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113931758 113931867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113932289 113932458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113932936 113933093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113942982 113943192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113944573 113944755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113945902 113946137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGTTGTCAAGTGTAATGGCTCCCCTGTGGGCCTGCATCCTGGTGGCTGCAGGAATTCTAGCCACAGATA
CACATCATCCCCAGGATTCTGCTCTGTATCATCTCAGCAAGCAGCTATTACAGAAATATCATAAAGAAGT
GAGACCTGTTTACAACTGGACCAAGGCCACCACAGTCTACCTGGACCTGTTCGTCCATGCTATATTGGAT
GTGGATGCAGAGAATCAAATATTAAAGACAAGTGTATGGTACCAAGAGGTCTGGAATGATGAATTTTTAT
CCTGGAACTCCAGCATGTTTGATGAGATTAGAGAGATCTCCCTACCTCTAAGTGCCATCTGGGCCCCCGA
TATCATCATCAATGAGTTTGTGGACATTGAAAGATACCCTGACCTTCCCTATGTTTATGTGAACTCATCT
GGGACCATTGAGAACTATAAGCCCATCCAGGTGGTCTCTGCGTGCAGTTTAGAGACATATGCTTTTCCAT
TTGATGTCCAGAATTGCAGCCTGACCTTCAAGAGCATTCTGCATACAGTGGAAGACGTAGACCTGGCCTT
TCTGAGGAGCCCAGAAGACATTCAGCATGACAAAAAGGCGTTTTTGAATGACAGTGAGTGGGAACTTCTA
TCTGTGTCCTCCACATACAGCATCCTGCAGAGCAGCGCTGGAGGATTTGCACAGATTCAGTTTAATGTGG
TGATGCGCAGGCACCCCCTGGTCTATGTCGTGAGTCTGCTGATTCCTAGCATCTTTCTCATGCTGGTGGA
CCTGGGGAGCTTCTACCTGCCACCCAACTGCCGAGCCAGGATTGTGTTCAAGACCAGTGTGCTGGTGGGC
TACACCGTCTTCAGGGTCAACATGTCCAACCAGGTGCCACGGAGTGTAGGGAGCACCCCTCTGATTGGGC
ACTTCTTCACCATCTGCATGGCCTTCTTGGTTCTCAGCTTAGCTAAGTCCATCGTGTTGGTCAAATTCCT
CCATGATGAGCAGCGTGGTGGACAGGAGCAGCCCTTCTTGTGCCTTCGAGGGGACACCGATGCTGACAGG
CCTAGAGTGGAACCCAGGGCCCAACGTGCTGTGGTAACAGAGTCCTCGCTGTATGGAGAGCACCTGGCCC
AGCCAGGAACCCTGAAGGAAGTCTGGTCGCAGCTTCAATCTATCAGCAACTACCTCCAAACTCAGGACCA
GACAGACCAACAGGAGGCAGAGTGGCTGGTCCTCCTGTCCCGCTTTGACCGACTGCTCTTCCAAAGCTAC
CTTTTCATGCTGGGGATCTACACCATCACTCTGTGCTCCCTCTGGGCACTGTGGGGCGGCGTGTGA

Translation (441 aa):
MLSSVMAPLWACILVAAGILATDTHHPQDSALYHLSKQLLQKYHKEVRPVYNWTKATTVYLDLFVHAILD
VDAENQILKTSVWYQEVWNDEFLSWNSSMFDEIREISLPLSAIWAPDIIINEFVDIERYPDLPYVYVNSS
GTIENYKPIQVVSACSLETYAFPFDVQNCSLTFKSILHTVEDVDLAFLRSPEDIQHDKKAFLNDSEWELL
SVSSTYSILQSSAGGFAQIQFNVVMRRHPLVYVVSLLIPSIFLMLVDLGSFYLPPNCRARIVFKTSVLVG
YTVFRVNMSNQVPRSVGSTPLIGHFFTICMAFLVLSLAKSIVLVKFLHDEQRGGQEQPFLCLRGDTDADR
PRVEPRAQRAVVTESSLYGEHLAQPGTLKEVWSQLQSISNYLQTQDQTDQQEAEWLVLLSRFDRLLFQSY
LFMLGIYTITLCSLWALWGGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH