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Report for CCDS2203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2203.1 Public Homo sapiens 2 GALNT5 24 110 108 CCDS HistoryNCBI Gene:11227Re-query CCDS DB by CCDS ID:2203.1Re-query CCDS DB by GeneID:11227See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2203.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259056.5 ENSP00000259056.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000259056.5Link to Ensembl Protein Viewer:ENSP00000259056.4Re-query CCDS DB by Nucleotide ID:ENST00000259056Re-query CCDS DB by Protein ID:ENSP00000259056
Original member Current member NCBI NM_014568.3 NP_055383.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014568.3Link to Protein Sequence:NP_055383.1Re-query CCDS DB by Nucleotide ID:NM_014568Re-query CCDS DB by Protein ID:NP_055383Link to BLAST:NP_055383.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055383.1 940 Q7Z7M9 940 100% 0 0

Chromosomal Locations for CCDS 2203.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 157258083 157259536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157284282 157284448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157286015 157286134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157295663 157295798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157296394 157296513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157299548 157299665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157300676 157300999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157305749 157305829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157308567 157308728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157311208 157311348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2823 nt):
ATGAACAGGATCCGAAAGTTTTTCCGAGGAAGTGGGCGAGTCTTGGCATTTATCTTTGTAGCTTCTGTCA
TCTGGCTCCTCTTTGACATGGCAGCTCTCCGCCTCTCATTCAGTGAGATCAACACTCGGGTCATCAAGGA
AGACATTGTGAGGAGGGAGCGGATAGGATTCAGAGTTCAGCCAGACCAAGGAAAAATTTTTTACAGCAGC
ATAAAAGAGATGAAACCTCCCCTAAGGGGACATGGGAAAGGGGCATGGGGCAAAGAGAATGTTAGAAAAA
CTGAGGAGAGTGTGCTCAAGGTTGAGGTGGACTTGGACCAAACCCAGAGGGAAAGAAAAATGCAGAATGC
CCTGGGAAGGGGCAAGGTTGTGCCGTTGTGGCATCCTGCACATCTGCAGACCCTCCCTGTGACTCCTAAC
AAGCAGAAGACAGACGGGAGAGGCACCAAACCTGAAGCCTCCTCTCACCAGGGGACACCAAAGCAAACGA
CAGCTCAGGGGGCTCCAAAGACCTCATTCATAGCAGCAAAAGGAACTCAGGTAGTCAAAATATCAGTACA
CATGGGACGTGTCAGTTTAAAACAGGAGCCCCGGAAGAGTCATAGTCCCAGCAGTGACACATCAAAACTA
GCAGCTGAAAGGGACTTGAATGTGACCATCAGTCTTAGTACTGATAGACCAAAGCAGCGATCACAGGCAG
TAGCAAACGAGAGGGCACACCCTGCCAGCACAGCAGTGCCGAAGTCTGGGGAAGCCATGGCCTTAAACAA
AACTAAGACTCAGAGCAAAGAAGTCAATGCAAATAAACACAAAGCCAATACGAGTCTTCCTTTTCCTAAG
TTCACTGTCAATTCAAATCGCTTAAGGAAGCAATCTATTAATGAGACACCTTTGGGAAGTTTGTCAAAGG
ATGATGGAGCTAGAGGGGCTCATGGGAAGAAACTCAATTTCTCTGAAAGCCATCTTGTGATTATAACCAA
AGAGGAAGAGCAAAAGGCAGACCCCAAAGAGGTCTCTAATTCTAAAACCAAAACAATATTTCCTAAAGTA
TTGGGTAAAAGCCAAAGTAAACACATTTCCAGGAATAGAAGTGAGATGTCTTCCTCTTCACTTGCTCCAC
ATAGAGTGCCACTGTCCCAAACTAACCATGCTTTAACTGGAGGGCTAGAGCCAGCAAAAATCAACATAAC
TGCCAAAGCCCCCTCTACAGAATACAACCAGAGTCATATAAAAGCCCTTTTACCTGAAGACAGTGGAACG
CACCAGGTGTTAAGAATTGATGTGACACTTTCTCCAAGGGACCCCAAAGCTCCAGGGCAGTTTGGGCGTC
CTGTAGTTGTCCCCCATGGAAAGGAGAAGGAGGCAGAAAGAAGATGGAAAGAAGGAAACTTCAATGTCTA
CCTTAGCGATTTGATCCCAGTGGATAGAGCCATTGAAGACACCAGACCTGCTGGATGTGCAGAGCAGCTA
GTTCACAATAACCTCCCAACCACCAGTGTCATCATGTGCTTTGTGGATGAAGTGTGGTCCACTCTCCTGA
GATCTGTTCACAGTGTCATCAATCGCTCTCCTCCACACCTCATCAAGGAGATTCTGCTGGTAGATGACTT
CAGCACCAAAGACTATCTAAAAGATAATTTGGATAAATACATGTCCCAGTTTCCAAAAGTTCGGATTCTT
CGCCTCAAAGAGAGACATGGCTTAATAAGGGCCAGGCTGGCAGGAGCACAGAATGCAACAGGTGATGTGT
TGACATTTTTAGATTCTCATGTGGAATGTAACGTTGGTTGGTTGGAACCTCTTCTGGAAAGAGTTTATTT
AAGTAGAAAGAAAGTGGCCTGTCCAGTAATCGAAGTCATCAATGATAAGGATATGAGTTACATGACAGTG
GATAACTTTCAAAGAGGCATCTTTGTGTGGCCCATGAACTTTGGTTGGAGAACAATTCCTCCAGATGTCA
TTGCAAAAAACAGAATTAAAGAAACTGATACAATAAGGTGCCCTGTCATGGCTGGTGGATTGTTTTCTAT
TGACAAAAGTTACTTTTTTGAACTTGGAACATACGACCCTGGCCTTGATGTTTGGGGTGGGGAAAATATG
GAGCTCTCATTCAAGGTGTGGATGTGTGGTGGTGAAATTGAGATCATTCCCTGCTCCCGAGTGGGCCATA
TATTCAGAAATGACAATCCATATTCCTTCCCCAAAGACCGGATGAAGACAGTGGAGCGGAACTTGGTGCG
GGTTGCCGAGGTCTGGCTGGATGAGTATAAGGAGCTGTTCTATGGCCACGGAGACCACCTCATCGACCAA
GGGCTAGATGTTGGCAACCTCACCCAGCAAAGGGAGCTGCGAAAGAAACTGAAGTGCAAAAGTTTCAAAT
GGTACTTGGAGAATGTCTTTCCTGACTTAAGGGCTCCCATTGTGAGAGCTAGTGGTGTGCTTATTAATGT
GGCTTTGGGTAAATGCATTTCCATTGAAAACACTACAGTCATTCTGGAAGACTGCGATGGGAGCAAAGAG
CTTCAACAATTTAATTACACCTGGTTAAGACTTATTAAATGTGGAGAATGGTGTATAGCCCCCATCCCTG
ATAAAGGAGCCGTAAGGCTGCACCCTTGTGATAACAGAAACAAAGGGCTAAAATGGCTGCATAAATCAAC
ATCAGTCTTTCATCCAGAACTGGTGAATCACATTGTTTTTGAAAACAATCAGCAATTATTATGCTTGGAA
GGAAATTTTTCTCAAAAGATCCTGAAAGTAGCTGCCTGTGACCCAGTGAAGCCATATCAAAAGTGGAAAT
TTGAAAAATATTATGAAGCCTGA

Translation (940 aa):
MNRIRKFFRGSGRVLAFIFVASVIWLLFDMAALRLSFSEINTRVIKEDIVRRERIGFRVQPDQGKIFYSS
IKEMKPPLRGHGKGAWGKENVRKTEESVLKVEVDLDQTQRERKMQNALGRGKVVPLWHPAHLQTLPVTPN
KQKTDGRGTKPEASSHQGTPKQTTAQGAPKTSFIAAKGTQVVKISVHMGRVSLKQEPRKSHSPSSDTSKL
AAERDLNVTISLSTDRPKQRSQAVANERAHPASTAVPKSGEAMALNKTKTQSKEVNANKHKANTSLPFPK
FTVNSNRLRKQSINETPLGSLSKDDGARGAHGKKLNFSESHLVIITKEEEQKADPKEVSNSKTKTIFPKV
LGKSQSKHISRNRSEMSSSSLAPHRVPLSQTNHALTGGLEPAKINITAKAPSTEYNQSHIKALLPEDSGT
HQVLRIDVTLSPRDPKAPGQFGRPVVVPHGKEKEAERRWKEGNFNVYLSDLIPVDRAIEDTRPAGCAEQL
VHNNLPTTSVIMCFVDEVWSTLLRSVHSVINRSPPHLIKEILLVDDFSTKDYLKDNLDKYMSQFPKVRIL
RLKERHGLIRARLAGAQNATGDVLTFLDSHVECNVGWLEPLLERVYLSRKKVACPVIEVINDKDMSYMTV
DNFQRGIFVWPMNFGWRTIPPDVIAKNRIKETDTIRCPVMAGGLFSIDKSYFFELGTYDPGLDVWGGENM
ELSFKVWMCGGEIEIIPCSRVGHIFRNDNPYSFPKDRMKTVERNLVRVAEVWLDEYKELFYGHGDHLIDQ
GLDVGNLTQQRELRKKLKCKSFKWYLENVFPDLRAPIVRASGVLINVALGKCISIENTTVILEDCDGSKE
LQQFNYTWLRLIKCGEWCIAPIPDKGAVRLHPCDNRNKGLKWLHKSTSVFHPELVNHIVFENNQQLLCLE
GNFSQKILKVAACDPVKPYQKWKFEKYYEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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