NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13246.1 Public Homo sapiens 20 TRPC4AP 24 110 108 CCDS HistoryNCBI Gene:26133Re-query CCDS DB by CCDS ID:13246.1Re-query CCDS DB by GeneID:26133See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13246.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252015.3 ENSP00000252015.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252015.3Link to Ensembl Protein Viewer:ENSP00000252015.2Re-query CCDS DB by Nucleotide ID:ENST00000252015Re-query CCDS DB by Protein ID:ENSP00000252015
Original member Current member NCBI NM_015638.3 NP_056453.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015638.3Link to Protein Sequence:NP_056453.1Re-query CCDS DB by Nucleotide ID:NM_015638Re-query CCDS DB by Protein ID:NP_056453Link to BLAST:NP_056453.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056453.1 797 Q8TEL6-1 797 100% 0 0

Chromosomal Locations for CCDS 13246.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 35003146 35003283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35003410 35003616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35004458 35004570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35005695 35005803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35006435 35006575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35007550 35007640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35008664 35008747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35010187 35010288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35013008 35013066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35016008 35016139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35021190 35021356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35035123 35035308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35044505 35044712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35049866 35049994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35054976 35055031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35057514 35057571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35069296 35069412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35078046 35078174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35092614 35092781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2394 nt):
ATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAGTGGCGG
CTTGGGGCGGATGGGGCGGCCGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGAC
CGGCCGGGGCCTGGTCCGGGCGGTGCAGTTCACTGAGACTTTTTTGACGGAGAGGGACAAACAATCCAAG
TGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGCACACCACCAGCCACCTCCACAGTGACTTTGTTGAGT
GTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCATTTGTTACTGAAGAGAG
GAAACTTACCCAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATCTTCTT
GTAGAAATTCTTATGAGGCCTACGATCTCTATCCGGGGACAGAAACTGAAAATAAGTGATGAAATGTCCA
AGGACTGCTTGAGTATCCTGTATAATACCTGTGTCTGTACAGAGGGAGTTACAAAGCGTTTGGCAGAAAA
GAATGACTTTGTGATCTTCCTGTTTACATTGATGACAAGTAAGAAGACATTCTTACAAACAGCAACCCTC
ATTGAAGATATTTTGGGTGTTAAAAAGGAAATGATCCGACTAGATGAAGTCCCCAATCTGAGTTCCTTAG
TATCCAATTTCGATCAGCAGCAGCTCGCTAATTTCTGCCGGATTCTGGCTGTCACCATTTCAGAGATGGA
TACAGGGAATGATGACAAGCACACGCTTCTTGCCAAAAATGCTCAACAGAAGAAGAGCTTGAGTTTGGGG
CCTTCTGCAGCTGAAATCAATCAAGCGGCCCTTCTCAGCATTCCTGGCTTTGTTGAGCGGCTTTGCAAAC
TGGCGACTCGAAAGGTGTCAGAGTCAACGGGCACAGCCAGCTTCCTTCAGGAGTTGGAAGAGTGGTACAC
ATGGCTAGACAATGCTTTGGTGCTAGATGCCCTGATGCGAGTGGCCAATGAGGAGTCAGAGCACAATCAA
GCCTCCATTGTGTTCCCTCCTCCAGGGGCTTCTGAGGAGAATGGCCTGCCTCACACGTCAGCCAGAACCC
AGCTGCCCCAGTCAATGAAGATTATGCATGAGATCATGTACAAACTGGAAGTGCTCTATGTCCTCTGCGT
GCTGCTGATGGGGCGTCAGCGAAACCAGGTTCACAGAATGATTGCAGAGTTCAAGCTGATCCCTGGACTT
AATAATTTGTTTGACAAACTGATTTGGAGGAAGCATTCAGCATCTGCCCTTGTCCTCCATGGTCACAACC
AGAACTGTGACTGTAGCCCGGACATCACCTTGAAGATACAGTTTTTGAGGCTTCTTCAGAGCTTCAGTGA
CCACCACGAGAACAAGTACTTGTTACTCAACAACCAGGAGCTGAATGAACTCAGTGCCATCTCTCTCAAG
GCCAACATCCCTGAGGTGGAAGCTGTCCTCAACACCGACAGGAGTTTGGTGTGTGATGGGAAGAGGGGCT
TATTAACTCGTCTGCTGCAGGTCATGAAGAAGGAGCCAGCAGAGTCGTCTTTCAGGTTTTGGCAAGCTCG
GGCTGTGGAGAGTTTCCTCCGAGGGACCACCTCCTATGCAGACCAGATGTTCCTGCTGAAGCGAGGCCTC
TTGGAGCACATCCTTTACTGCATTGTGGACAGCGAGTGTAAGTCAAGGGATGTGCTCCAGAGTTACTTTG
ACCTCCTGGGGGAGCTGATGAAGTTCAACGTTGATGCATTCAAGAGATTCAATAAATATATCAACACCGA
TGCAAAGTTCCAGGTATTCCTGAAGCAGATCAACAGCTCCCTGGTGGACTCCAACATGCTGGTGCGCTGT
GTCACTCTGTCCCTGGACCGATTTGAAAACCAGGTGGATATGAAAGTTGCCGAGGTACTGTCTGAATGCC
GCCTGCTCGCCTACATATCCCAGGTGCCCACGCAGATGTCCTTCCTCTTCCGCCTCATCAACATCATCCA
CGTGCAGACGCTGACCCAGGAGAACGTCAGCTGCCTCAACACCAGCCTGGTGATCCTGATGCTGGCCCGA
CGGAAAGAGCGGCTGCCCCTGTACCTGCGGCTGCTGCAGCGGATGGAGCACAGCAAGAAGTACCCCGGCT
TCCTGCTCAACAACTTCCACAACCTGCTGCGCTTCTGGCAGCAGCACTACCTGCACAAGGACAAGGACAG
CACCTGCCTAGAGAACAGCTCCTGCATCAGCTTCTCATACTGGAAGGAGACAGTGTCCATCCTGTTGAAC
CCGGACCGGCAGTCACCCTCTGCTCTCGTTAGCTACATTGAGGAGCCCTACATGGACATAGACAGGGACT
TCACTGAGGAGTGA

Translation (797 aa):
MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKQSK
WSGIPQLLLKLHTTSHLHSDFVECQNILKEISPLLSMEAMAFVTEERKLTQETTYPNTYIFDLFGGVDLL
VEILMRPTISIRGQKLKISDEMSKDCLSILYNTCVCTEGVTKRLAEKNDFVIFLFTLMTSKKTFLQTATL
IEDILGVKKEMIRLDEVPNLSSLVSNFDQQQLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLG
PSAAEINQAALLSIPGFVERLCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQ
ASIVFPPPGASEENGLPHTSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGL
NNLFDKLIWRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQELNELSAISLK
ANIPEVEAVLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTSYADQMFLLKRGL
LEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRFNKYINTDAKFQVFLKQINSSLVDSNMLVRC
VTLSLDRFENQVDMKVAEVLSECRLLAYISQVPTQMSFLFRLINIIHVQTLTQENVSCLNTSLVILMLAR
RKERLPLYLRLLQRMEHSKKYPGFLLNNFHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLN
PDRQSPSALVSYIEEPYMDIDRDFTEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH