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Report for CCDS13975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13975.1 Public Homo sapiens 22 TOMM22 24 110 108 CCDS HistoryNCBI Gene:56993Re-query CCDS DB by CCDS ID:13975.1Re-query CCDS DB by GeneID:56993See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13975.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216034.6 ENSP00000216034.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000216034.6Link to Ensembl Protein Viewer:ENSP00000216034.4Re-query CCDS DB by Nucleotide ID:ENST00000216034Re-query CCDS DB by Protein ID:ENSP00000216034
Original member Current member NCBI NM_020243.5 NP_064628.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020243.5Link to Protein Sequence:NP_064628.1Re-query CCDS DB by Nucleotide ID:NM_020243Re-query CCDS DB by Protein ID:NP_064628Link to BLAST:NP_064628.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064628.1 142 Q9NS69 142 100% 0 0

Chromosomal Locations for CCDS 13975.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 38681979 38682095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38682323 38682441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38682879 38682996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38683767 38683841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGGCTGCCGCCGTCGCTGCTGCCGGTGCAGGGGAACCCCAGTCCCCGGACGAATTGCTCCCGAAAGGCG
ACGCGGAGAAGCCTGAGGAGGAGCTGGAGGAGGACGACGATGAGGAGCTAGATGAGACCCTGTCGGAGAG
ACTATGGGGCCTGACGGAGATGTTTCCGGAGAGGGTCCGGTCCGCGGCCGGAGCCACTTTTGATCTTTCC
CTCTTTGTGGCTCAGAAAATGTACAGGTTTTCCAGGGCAGCCTTGTGGATTGGGACCACTTCCTTTATGA
TCCTGGTTCTTCCCGTTGTCTTTGAGACGGAGAAGTTGCAAATGGAGCAACAGCAGCAACTGCAGCAGCG
GCAGATACTTCTAGGACCTAACACAGGGCTCTCAGGAGGAATGCCAGGGGCTCTACCCTCACTTCCTGGA
AAGATCTAG

Translation (142 aa):
MAAAVAAAGAGEPQSPDELLPKGDAEKPEEELEEDDDEELDETLSERLWGLTEMFPERVRSAAGATFDLS
LFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQILLGPNTGLSGGMPGALPSLPG
KI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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