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Report for CCDS79692.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
79692.1 |
Public |
Mus musculus |
19 |
Ms4a4a |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:666907](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:79692.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:666907](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 19 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 79692.1 |
This gene lacks full-length transcript support, and therefore this CCDS representation has an inferred exon combination based on partial transcript, RNA-seq alignments and orthologous data. |
Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 79692.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000188995.1 |
ENSMUSP00000140768.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000188995.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000140768.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000188995](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000140768](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001310331.1 |
NP_001297260.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001310331.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001297260.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001310331](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001297260](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001297260.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 79692.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (711 nt): ATGTTAGTCATACAAGGAACAGAACAGAGTGCATTGGAAGCTGGCTATGGGGCACAGCAGAATGGACAAC CTTTATATGTGAATTCGCATTCATGGAAAAGAATGACAGAGAAGTTCTTGAAGGGAGAACCCAAAATCCT TGGGATTGTGCAGATTGTAATCGCCATCATGAACCTCAGCATAGGAATTATGATGATAATTGCCACTGTG TCGACCGGTGAAATACCCCCTTCTTCAGTGTACATAGGATACCCAATTTGGGGGTCCCTAATGTTTATTA TTTCAGGATCATTTTCAATTGTAGCAGGAAGAAGAACTACAAAAGGTTTGGTTCGAAGCAGCCTAGGCTT GAACATTACCAGCTCCGTGTTTGCCTTCTCGGGGATCGTAATCAGCTCACTGAGCCCAGGCATTTATTCT TTCCATGTATATTACTGTACATATAGAGGTTCATCAGAAGGCTGTCACATGACCTTGTCCATTTTAATGG GTCTGGATATTGTGGTAGTCGTTTTAAGTGTGCTGGAATTCTGCATAGGAGTATCCCTCTCTGCCTTTGG ATGCAGGGTGATGTGTTGTAACCCTGGTGGGGTCATGATAATTATGCCATCAAATCCTACCAAGGCAGAG ACAGCAAATCCTGTAACACTTCAAAGTGGATTGATGCCACCAGAACACCAAGAGAGAAATGTTCCAGAAA ATATGCACTGA
Translation (236 aa): MLVIQGTEQSALEAGYGAQQNGQPLYVNSHSWKRMTEKFLKGEPKILGIVQIVIAIMNLSIGIMMIIATV STGEIPPSSVYIGYPIWGSLMFIISGSFSIVAGRRTTKGLVRSSLGLNITSSVFAFSGIVISSLSPGIYS FHVYYCTYRGSSEGCHMTLSILMGLDIVVVVLSVLEFCIGVSLSAFGCRVMCCNPGGVMIIMPSNPTKAE TANPVTLQSGLMPPEHQERNVPENMH
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