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Report for CCDS85170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85170.1 Public Mus musculus 6 Clec7a 23 108 98 CCDS HistoryNCBI Gene:56644Re-query CCDS DB by CCDS ID:85170.1Re-query CCDS DB by GeneID:56644See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 85170.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000184581.2 ENSMUSP00000139167.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184581.2Link to Ensembl Protein Viewer:ENSMUSP00000139167.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184581Re-query CCDS DB by Protein ID:ENSMUSP00000139167
Original member Current member NCBI NM_001309637.2 NP_001296566.1 Accepted alive Link to Nucleotide Sequence:NM_001309637.2Link to Protein Sequence:NP_001296566.1Re-query CCDS DB by Nucleotide ID:NM_001309637Re-query CCDS DB by Protein ID:NP_001296566Link to BLAST:NP_001296566.1

Chromosomal Locations for CCDS 85170.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 129463041 129463167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129465455 129465573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129467517 129467668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129470899 129470997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129472583 129472685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGAAATATCACTCTCATATAGAGAATCTGGATGAAGATGGATATACTCAATTAGACTTCAGCACTCAAG
ACATCCATAAAAGGCCCAGGGGATCAGAGAAAGGAAGCCAGGCTCCATCTTCACCTTGGAGGCCCATTGC
AGTGGGTTTAGGAATCCTGTGCTTTGTGGTAGTAGTGGTTGCTGCAGTGCTGGGTGCCCTAGGAGGTTTT
TCTCAGCCTTGCCTTCCTAATTGGATCATGCATGGGAAGAGCTGTTACCTATTTAGCTTCTCAGGAAATT
CCTGGTATGGAAGTAAGAGACACTGCTCCCAGCTAGGTGCTCATCTACTGAAGATAGACAACTCAAAAGA
ATTTGAGTTCATTGAAAGCCAAACATCGTCTCACCGTATTAATGCATTTTGGATAGGCCTTTCCCGCAAT
CAGAGTGAAGGGCCATGGTTCTGGGAGGATGGATCAGCATTCTTCCCCAACTCGTTTCAAGTCAGAAATA
CAGCTCCCCAGGAAAGCTTACTGCACAATTGTGTATGGATTCATGGATCAGAGGTCTACAACCAAATCTG
CAATACTTCTTCATACAGTATCTGTGAGAAGGAACTGTAA

Translation (199 aa):
MKYHSHIENLDEDGYTQLDFSTQDIHKRPRGSEKGSQAPSSPWRPIAVGLGILCFVVVVVAAVLGALGGF
SQPCLPNWIMHGKSCYLFSFSGNSWYGSKRHCSQLGAHLLKIDNSKEFEFIESQTSSHRINAFWIGLSRN
QSEGPWFWEDGSAFFPNSFQVRNTAPQESLLHNCVWIHGSEVYNQICNTSSYSICEKEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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