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Report for CCDS59616.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
59616.1 |
Public |
Mus musculus |
14 |
Arhgef40 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:268739](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:59616.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:268739](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 14 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 59616.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000182061.7 |
ENSMUSP00000138128.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000182061.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000138128.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000182061](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000138128](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001145922.1 |
NP_001139394.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001145922.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001139394.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001145922](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001139394](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001139394.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001139394.1 |
1469 |
Q3UPH7-3 |
1469 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 59616.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4410 nt): ATGGAGCCTGAACCAGTGGAGGACTGTGTGCAGAGCACGCTTGCTGCCTTGTACCCGCCCTTTGAAGCCA CAGCCCCAACCCTGTTGGGCCAGGTGTTCCAGGTGGTGGAGAGGACGTACCAGGAGGATGCGCTGAGGTA CACGCTGGACTTCCTGGTACCTGCTAAACACCTGCTTGCCAAGGTCCAGCAGGAAGCCTGTGCCCAGTAT AGTGGATTCCTCTTCTTCCACGAGGGCTGGCCACTCTGCTTGCATGAGCAGGTGGTAGTGCAGCTAGCGG CCCTTCCCTGGCAGCTGCTGCGCCCTGGAGACTTCTACCTGCAGGTAGTGCCTTCAGCAGCCCAGGCACC CCGGCTGGCACTGAAATGCCTGGCCCCAGGAGGTGGGCGGGTACAGGAGCTCCCAGTGCCCAGTGAAGCC TGTGCCTACCTCTTCACACCTGAGTGGCTACAAGGCATTAACAAGGACCGGCCAACAGGGCGCCTCAGCA CCTGCCTTCTGTCCGCCCCCTCCGGGATCCAGCGGCTGCCCTGGGCTGAGCTCGTCTGCCCACGATTTGT GCACAAAGAGGGCCTCATGGTGGGACATCAACCAAGTACATTGCCTCCAGAACTGCCCTCTGGACCTCCA GGTCTTCCCAGCTCTCCACTCCCTGAGGAGGTACTTGGTACCCGGAGTCCTGGGGATGGACACAACGCTC CCGCAGAAGGTCCCGAGGGTGAATATGTGGAGCTGTTGGAGGTGACACTGCCTGTGAGGGGAAGCCCTGT AGATGCTGAGGCCTCGGGCCTCTCCCGGACCCGCACAGTACCCGCCCGTAAGAGCACTGGAGGGAAGGGC CGGCACCGGAGACACAGGGCGTGGATGAATCAGAAAGGCCTGGGATCTCGGGATCAGGATGGGACGCGGC CGCCTGGTGAGGGAAGTAGCACCGGGGCCTCTTCCGACTCACCTTCAGGGGCTGAGGCAGACCCAGATGC CACCGCCCTCCAGGCATCTGAGCCCCCGGCAGAGGCTCTCGGGGAAGCCCCTGAATCCTGCCTCCTGTCA GGGGAGGCTGTGGGAGGAGTGGGCCAGGGGGCTGAAGGACCACCTGGTACCCCTCGAAGAACCGGCAAAG GAAACAGAAGAAAGAAGCGAGCTGCGGGCAGAGGCGCTGGAAGCCGGGGAGGGGAGGGTACCTCACTCAG CCCCAGGGACAAAGAAGAGACCAGACAGCAGGAAGTCCTTGTCAGTCTGCCCTCACCCAGTGAACAGGAA CCTGCAGAATGCAGCCTGGTTAAGGAGAAAGAGGATTCTGGGAAGCAAGAGTCTGAATCAAAAGAGGAAC TCAAGCCAGCAGATGAAAAAGAGCCTGCACGCCCAGAAGACTATGAGCCTCCAGAAGAGGAGATCAGAGA GAGTGAGAAAGAGGAGTTGACCCCGCAGTGTACGGCAGGATCCACAGGTCCAGAGTGGTTCCCATCTGAG CCCTCAACACAGCCCCTGGAGACTGTGCAGAATGTTAAAGGAGACAGCCTCCCAGAGGAAACTCCCCCAG TTTCTGTTTTGGATGACCCAGTTGTAGCTTGGGACTTGATGGCATCTGGATTCTTCGTTCTGACTGGAGG GGTAGATCAGACTGGGCGAGCTCTGCTGACAATCACGCCTCCACCTCCGTGCCTTCCTGAGGAGTCCTCA CCCTCCCAAGAGACACTGAGCACTGCTCTCCGTTACCTCCACTCACTGCTTAGGCCTGATCTGCAGTTAC TGGGGCTGACCATCCTCCTTGACCTTCGCAAGGCACCTCCACTGCCTCCAGCACTTCTTCCTGCCTTGAG TCAGCTTCAGGACTCAGGCGAGCCTCCGCTCATTCAGCGGCTGGTGATCCTCATTCATGAAGACCCTCCA GCTGAACTCTGTGGATTTCAGGGAGCTGAGTTGCTGTCAGAGAAGGATCTGAAAAGAGTGGCCAAGCCAG AGGAGCTACAGTGGGACTTAGGAGGTCACAGGGACCTCTCCCCCAACCACTGGGCAGAGATACATCAGGA AGTGGCAAGGCTATGCACCTTGTGCCAAGGCGTGTTGACCTCCGTACGGCAGGCCATTGAGGAGCTAGAG GGAACAGCAGAACCCAAAGAAGAGGAGGCCGTGGGAATGCCTGAGCCTCTGCAAAAGGTGCTGGCAGATC CTCGGCTGACAGCACTACAGAGGAACGGAGGAGCCATCCTGATGCGCCTGCGCTCCGCCCACAGCAGCAA GCTAGAGGGCCCAGGCCCAGCTGAGCTATACCAGGAGGTAGATGAGGCCATTCACCAACTTGTGCGTCTG TCCAACCTACGAGTGCAGCAGCAGGAAGAACGGCAGCGCCTGCGCCAAGTCCAGCAGGTGTTGCAGTGGC TGTCTGGCCCAGGAGAAGAGCAGCTGGCAAGCTTCTCCATGCCGGGGAACTCACTGTCAGTCTTGCAAGA GACAGAACTTCGATTCAGGGCTTTTAGCACAGAAGTGCAGGAGCGCCTAGTCCAAGCCCGGGAAGCTTTG GCTCTGGAGGAGGACCTTACCTCCCAGAAAGTTCTAGACATCTTTGAACAACGGTTGGAGCAGGCTGAGA GCGGCCTCCACCGGGCCCTCAGGCTACAGCGCTTCTTCCAGCAGGCACACGAATGGGTAGATGAGGGCTC TGCTCGGCTGGCAGGAGCTGGGTCTGGTCGTGAAGCTCTGCTGGCAGCCCTAGCCCTGCGGAGGGCCCCA GAACCCAGTGCAGGCACCTTCCAAGAGATGCGAGCCCTGGCCCTGGACTTGGGCAGCCCCGCAGCCCTTC GAGAGTGGGGCCGATGTCGGGCACGCTGCCAGGAGCTGGAAAGAAGGATTCAGCAGCAGCTGGGAGAGGA GGCCAGTCCTAGAAGCCACCGACGACGTCGGGCAGACAGTGCCAGCAGCGCAGGGGCCCAGCACGGAGCC CATAGCCCTTCACCCAGCCTCAGTTCCCTGCTGCTTCCCAGCAGCCCTGGGCCACGGGCAGCCCCATCAC ATTGCTCTCTGACCCCATGTGGGGAGGATTATGAGGAAGAAGGCCTTGAGCTAGCTCCAGAAACAGATGG AAGACCCCCAAGGGCTGTGCTAATCCGAGGACTGGAGGTCACCAGTACTGAAGTGGTAGACAGGACATGT TCGCCCCGAGAACACGTACTATTGGGCCGGGCTGGAGGGCCAGATGGACCCTGGGGAATAGGTACCCCTC GAATGGAACGCAAACGAAGCATCAGCGCCCAGCAGCGTCTAGTGTCTGAACTGATTGCCTGTGAGCAGGA GTACGTAACCACCCTGAATGAGCCAGTGCCGCTGCCTGGGCCTGAGCTAACGCCTGAGCTTCGATGCACC TGGGCTGCAGCCCTGAGTGTCCGAGAGAGGCTTCGCAGCTTCCACGGGACACACTTTCTACAAGAGCTTC AGGGCTGCGCCGCCCACCCCCTGCGCATTGGGGCCTGCTTCCTTCGCCATGGGGATCAGTTCAACCTCTA TGCACAGTTCGTGAAGCACAGGCATAAACTGGAGAGTGGTCTGGCTGCGCTCACCCCCTCGGTCAAGGGT TCCATGGAGAGCAGCCCTTGCTTGCCCCGGGCCCTGCAGCAGCCACTGGAGCAGCTGGCTCGGTATGGAC AGCTCCTGGAGGAGCTCCTGAGGGAAGCCGGGCCTGAGCTAAGCTCTGAACGCCAGGCCCTCAGGGCCGC TGTACAGTTGCTCCAGGAACAAGAGGCCCGAGGCAGAGATCTGCTTGCTGTGGAAGCTGTTCGAGGCTGT GAGATAGATCTAAAGGAACAGGGACAGCTCTTGCATCGGGACCCTTTCACTGTCATCTGTGGCCGGAAAA AGTGCCTCCGCCACGTCTTCCTGTTTGAGGACCTGCTCTTATTCAGCAAGCTCAAGGGATCTGAAGGAGG ATCCGAGACCTTCGTTTACAAGCAGGCTTTCAAGACCGCTGACATGGGGCTGACAGAAAACATCGGGGAC AGTGGACTCTGTTTCGAACTATGGTTTCGACGACGGCGTGCAAGAGAAGCATACACGTTGCAGGCTACTT CGCCAGAGACCAAACTCAAGTGGACAAGTTCTATTGCCCAGCTGCTGTGGAGACAGGCAGCCCACAACAA GGAACTCCGAGTGCAGCAGATGGTTTCCATGGGCATTGGGAATAAACCTTTCCTGGACATTAAAGCCCTT GGGGAACGGACACTGAGTGCCCTGCTCACTGGAAGAGCCTCAGAAACACTTGATTCTTCTGGAGATGTGT CCCCAGGACCACGAAACAGCCCCAGCCTGCAGCCCCCCAGCCCTGGGAGCAGTACTCCCGCTCTGACCAG TGGAGGGATCTTAGGGCTCTCTCGGCAGAGTCATTCCCGAGCCCTGAGTGACCCCACCACGCCTCTGTGA
Translation (1469 aa): MEPEPVEDCVQSTLAALYPPFEATAPTLLGQVFQVVERTYQEDALRYTLDFLVPAKHLLAKVQQEACAQY SGFLFFHEGWPLCLHEQVVVQLAALPWQLLRPGDFYLQVVPSAAQAPRLALKCLAPGGGRVQELPVPSEA CAYLFTPEWLQGINKDRPTGRLSTCLLSAPSGIQRLPWAELVCPRFVHKEGLMVGHQPSTLPPELPSGPP GLPSSPLPEEVLGTRSPGDGHNAPAEGPEGEYVELLEVTLPVRGSPVDAEASGLSRTRTVPARKSTGGKG RHRRHRAWMNQKGLGSRDQDGTRPPGEGSSTGASSDSPSGAEADPDATALQASEPPAEALGEAPESCLLS GEAVGGVGQGAEGPPGTPRRTGKGNRRKKRAAGRGAGSRGGEGTSLSPRDKEETRQQEVLVSLPSPSEQE PAECSLVKEKEDSGKQESESKEELKPADEKEPARPEDYEPPEEEIRESEKEELTPQCTAGSTGPEWFPSE PSTQPLETVQNVKGDSLPEETPPVSVLDDPVVAWDLMASGFFVLTGGVDQTGRALLTITPPPPCLPEESS PSQETLSTALRYLHSLLRPDLQLLGLTILLDLRKAPPLPPALLPALSQLQDSGEPPLIQRLVILIHEDPP AELCGFQGAELLSEKDLKRVAKPEELQWDLGGHRDLSPNHWAEIHQEVARLCTLCQGVLTSVRQAIEELE GTAEPKEEEAVGMPEPLQKVLADPRLTALQRNGGAILMRLRSAHSSKLEGPGPAELYQEVDEAIHQLVRL SNLRVQQQEERQRLRQVQQVLQWLSGPGEEQLASFSMPGNSLSVLQETELRFRAFSTEVQERLVQAREAL ALEEDLTSQKVLDIFEQRLEQAESGLHRALRLQRFFQQAHEWVDEGSARLAGAGSGREALLAALALRRAP EPSAGTFQEMRALALDLGSPAALREWGRCRARCQELERRIQQQLGEEASPRSHRRRRADSASSAGAQHGA HSPSPSLSSLLLPSSPGPRAAPSHCSLTPCGEDYEEEGLELAPETDGRPPRAVLIRGLEVTSTEVVDRTC SPREHVLLGRAGGPDGPWGIGTPRMERKRSISAQQRLVSELIACEQEYVTTLNEPVPLPGPELTPELRCT WAAALSVRERLRSFHGTHFLQELQGCAAHPLRIGACFLRHGDQFNLYAQFVKHRHKLESGLAALTPSVKG SMESSPCLPRALQQPLEQLARYGQLLEELLREAGPELSSERQALRAAVQLLQEQEARGRDLLAVEAVRGC EIDLKEQGQLLHRDPFTVICGRKKCLRHVFLFEDLLLFSKLKGSEGGSETFVYKQAFKTADMGLTENIGD SGLCFELWFRRRRAREAYTLQATSPETKLKWTSSIAQLLWRQAAHNKELRVQQMVSMGIGNKPFLDIKAL GERTLSALLTGRASETLDSSGDVSPGPRNSPSLQPPSPGSSTPALTSGGILGLSRQSHSRALSDPTTPL
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