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Report for CCDS18879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18879.1 Under review, withdrawal Mus musculus 4 Rsc1a1 23 108 98 CCDS HistoryNCBI Gene:69994Re-query CCDS DB by CCDS ID:18879.1Re-query CCDS DB by GeneID:69994See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18879.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105782.1 ENSMUSP00000101408.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105782.1Link to Ensembl Protein Viewer:ENSMUSP00000101408.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105782Re-query CCDS DB by Protein ID:ENSMUSP00000101408
Original member Current member EBI ENSMUST00000177592.1 ENSMUSP00000136018.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177592.1Link to Ensembl Protein Viewer:ENSMUSP00000136018.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177592Re-query CCDS DB by Protein ID:ENSMUSP00000136018
Original member Current member NCBI NM_023544.5 NP_076033.4 Accepted alive Link to Nucleotide Sequence:NM_023544.5Link to Protein Sequence:NP_076033.4Re-query CCDS DB by Nucleotide ID:NM_023544Re-query CCDS DB by Protein ID:NP_076033Link to BLAST:NP_076033.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076033.4 582 Q9ER99 582 100% 0 0

Chromosomal Locations for CCDS 18879.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 141683851 141685599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGTCATCATTGCCGACTTCAGATGGGTTTGACCATCCAGCTCCTTCAGGGCAGAGTCCTGAGGTTGGTA
GCCCGACGAGTCTCGCTCGCTCTGTTTCTGCTTCCGTCTGCGCCATCAAGCCCGGTGACCCCAATAGCAT
TGAATCTCTAGCTATGGAGGCTACGAAGGCTTCAGCTGAATTCCAGACAAACTCTAAGAAAACAGACCCT
CCTCCTCTGCAGGTTCTTCCTGACCTTGCTTCCTCAGCAGAGCAGAGTCTAGCCATGCCTTTCCATAAGT
CATCAAAAGAAGCCGTTGTTGCAGGTAATCTGGAGAAATCTGTTGAGAAAGGAACCCAGGGCCTCAGAGT
GTATCTCCACACAAGACAGGACGCTAGTTTAACTCTCACAACTACTGGGATGCGGGAGCCACAGATATTT
GCGGAGGAAAAGAGTTGGCATCCAGAAAATCAGACCCCAAGTCCCGTGAACGGCCTTCAGCAGCACAGAG
AAACAGGGAGTGTACAGCGAGAGGCTGGACAGCAGAGTGTTCCACAGGACCAGGGCTGTCTTTGTGACGC
AGAAGACCTTGAGCTTCATGAAGAAGTTGTCAGTTTGGAAGCTCTGAGGAAAGGTGAGCTACAAAGACAC
GCTCATCTTCCCAGTGCAGAGAAGGGTCTTCCAGCTTCAGGACTCTGTAGCTGTCCATGCTCAGAAGCCC
TGATGGAAGTAGATACAGCTGAACAGTCTCTGGTTGCTATGTGCAGCTCAACAGGCAGGCAGGATGCCGT
CATCAAGAGCCCTAGTGTAGCACATCTCGCTTCAGATAATCCCACTATGGAAGTGGAGACATTACAGTCT
AACCCGTCCTGTGAGCCTGTGGAACATTCCATCTTGACTCGGGAATTGCAGCTCCCAGAAGATAATGTTG
ACATGTCTACAATGGATAACAAAGATGACAATTCCTCTTCCCTTCTAAGTGGCCACGGTCAGCCCTCTGT
GGAATCAGCAGAAGAATTTTGTTCATCTGTCACAGTGGCCTTGAAAGAACTCCATGAGCTTTTGGTCATT
AGCTGTAAGCCAGCTTCAGAAGAGTCACCTGAGCATGTTACCTGTCAGTCAGAGATAGGAGCTGAGAGCC
AACCAAGTGTTTCAGACCTTTCAGGAAGAAGGGTCCAAAGTGTGCATTTGACCCCTAGTGACCAGTACTC
ACAAGGCTCCTGTCACCAGGCCACCTCTGAATCAGGAAAGACAGAAATCGTAGGAACTGCCCCTTGTGCT
GCGGTAGAAGATGAAGCATCCACTAGCTTTGAAGGTCTGGGTGATGGCTTGTCACCTGACCGAGAAGATG
TCCGCAGATCAACAGAGTCAGCCAGGAAGAGCTGTTCTGTCGCCATAACCTCAGCTAAACTGTCTGAGCA
GTTGCCCTGCACCTCAGGGGTAGAAATAGCACCTGAACTTGCAGCAAGTGAGGGTGCCCACAGTCAGCCT
TCAGAGCATGTGCATAATCCAGGCCCAGACAGGCCGGAGACCAGCAGTGTCTGCCCTGGAGCTGGGTTGC
CCCGTAGTGGATTGGACCAACCTCCCACACAGTCCTTGTCCACCCCCTCCGTTCTTCCACCGTTCATCTT
TCCTGCTGCAGATGTTGACAGGATTCTTGGTGCCGGCTTCACTCTGCAGGAAGCGCTCGGGGCTCTGCAT
CGAGTTGGTGGGAATGCAGACCTTGCCCTTCTTGTTTTGTTAGCAAAGAACATTGTAGTCCCAACATAA

Translation (582 aa):
MSSLPTSDGFDHPAPSGQSPEVGSPTSLARSVSASVCAIKPGDPNSIESLAMEATKASAEFQTNSKKTDP
PPLQVLPDLASSAEQSLAMPFHKSSKEAVVAGNLEKSVEKGTQGLRVYLHTRQDASLTLTTTGMREPQIF
AEEKSWHPENQTPSPVNGLQQHRETGSVQREAGQQSVPQDQGCLCDAEDLELHEEVVSLEALRKGELQRH
AHLPSAEKGLPASGLCSCPCSEALMEVDTAEQSLVAMCSSTGRQDAVIKSPSVAHLASDNPTMEVETLQS
NPSCEPVEHSILTRELQLPEDNVDMSTMDNKDDNSSSLLSGHGQPSVESAEEFCSSVTVALKELHELLVI
SCKPASEESPEHVTCQSEIGAESQPSVSDLSGRRVQSVHLTPSDQYSQGSCHQATSESGKTEIVGTAPCA
AVEDEASTSFEGLGDGLSPDREDVRRSTESARKSCSVAITSAKLSEQLPCTSGVEIAPELAASEGAHSQP
SEHVHNPGPDRPETSSVCPGAGLPRSGLDQPPTQSLSTPSVLPPFIFPAADVDRILGAGFTLQEALGALH
RVGGNADLALLVLLAKNIVVPT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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