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Report for CCDS57072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57072.1 Public Mus musculus 17 Bag6 23 108 98 CCDS HistoryNCBI Gene:224727Re-query CCDS DB by CCDS ID:57072.1Re-query CCDS DB by GeneID:224727See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57072.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173550.7 ENSMUSP00000134628.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173550.7Link to Ensembl Protein Viewer:ENSMUSP00000134628.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173550Re-query CCDS DB by Protein ID:ENSMUSP00000134628
Original member NCBI NM_001252469.1 NP_001239398.1 Updated not alive Link to Nucleotide Sequence:NM_001252469.1Link to Protein Sequence:NP_001239398.1Re-query CCDS DB by Nucleotide ID:NM_001252469Re-query CCDS DB by Protein ID:NP_001239398
Current member NCBI NM_001252469.2 NP_001239398.1 Accepted alive Link to Nucleotide Sequence:NM_001252469.2Link to Protein Sequence:NP_001239398.1Re-query CCDS DB by Nucleotide ID:NM_001252469Re-query CCDS DB by Protein ID:NP_001239398Link to BLAST:NP_001239398.1

Chromosomal Locations for CCDS 57072.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35136128 35136235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35138372 35138489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35138586 35138782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35139235 35139309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35140233 35140489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35140822 35140951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35141426 35141623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35141830 35142082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35142307 35142384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35142498 35142605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35142727 35142839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35142926 35143010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35143333 35143682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35144151 35144442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35144599 35144768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35144946 35144999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35145137 35145239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35145329 35145453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35145606 35145752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35145862 35145921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35146026 35146169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35146246 35146353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35147141 35147236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3369 nt):
ATGGAGCCGAGTGATAGTGCCAGTACCGCTATGGAGGAGCCTGACAGCCTGGAGGTACTGGTGAAGACCC
TGGACTCTCAGACTCGGACTTTTATTGTGGGGGCCCAGATGAATGTAAAGGAGTTTAAGGAACACATAGC
TGCCTCTGTCAGCATCCCTTCCGAGAAACAGCGGCTCATCTACCAGGGCCGGGTCCTACAAGACGACAAG
AAGCTCCAGGAGTACAACGTTGGGGGAAAGGTTATTCACCTGGTGGAACGGGCTCCTCCTCAGACTCAGC
TTCCTTCTGGAGCATCTTCTGGGACAGGCTCTGCCTCAGCAACTCATGGTGGGGCACCCCTGCCTGGCAC
TCGGGGCCCTGGGGCTTCTGTTCATGACCGGAATGCCAACAGCTATGTCATGGTTGGAACCTTCAATCTT
CCTAGTGAGCCCCGGGTCCGGCTGGTGATGGCTCAGCACATGATTAGGGATATACAGACCTTACTGTCCC
GGATGGAGTGTCGAGGGGGAACCCAAGCTCAGGCCAGTCAGCCACCCCCGCAGACACCGCAGACTGTGGC
CTCAGAGACGGTAGCCTTGAACTCACAAACATCAGAACCAGTCGAAAGTGAAGCTCCTCCTCGAGAGCCC
ATGGAGTCAGAAGAAATGGAGGAACGTCCCCCAACCCAGACTCCAGAGCTTGCGCCCTCAGGCCCAGCTC
CCGCAGGCCCAGCTCCCGCAGGCCCAGCTCCCGCGCCAGAGACAAATGCACCCAACCACCCTTCCCCCGC
AGAGCACGTGGAGGTGCTCCAGGAGCTTCAGCGCTTGCAGCGCCGTCTTCAGCCTTTCCTACAGCGCTAC
TGCGAGGTCCTGGGCGCTGCTGCCACCACAGACTACAACAACAACCATGAGGGCCGTGAGGAGGACCAGA
GGTTGATCAACTTGGTTGGGGAGAGCCTGCGGCTACTGGGCAACACTTTCGTGGCATTGTCTGATCTGCG
CTGCAATCTAGCCTGTGCACCCCCACGGCACCTGCACGTGGTTCGGCCTATGTCTCACTACACGACTCCC
ATGGTGCTCCAGCAGGCAGCCATTCCCATTCAGATCAATGTGGGGACTACTGTGACCATGACAGGCAATG
GGGCTCGGCCTCCACCAGCTCCTGGTGCGGAGGCAGCAACCCCAGGTTCTGCCCAGGCCACATCCCTGCC
TCCCTCTTCCACCACTGTTGATTCATCAACTGAAGGAGCTCCCCCACCAGGGCCAGCACCGCCACCAGCC
TCCAGCCACCCACGGGTCATCCGGATTTCCCACCAGAGTGTGGAGCCCGTGGTCATGATGCACATGAACA
TTCAAGATTCTGGAGCACAGCCTGGTGGTGTGCCAAGTGCTCCCACTGGTCCACTGGGACCTCCTGGTCA
TGGACAGACCCTGGGCTCCACCCTCATCCAGCTGCCCTCCCTGCCCCCTGAGTTCATGCACGCCGTCGCC
CACCAGATCACTCATCAGGCCATGGTGGCAGCTGTTGCCTCCGCGGCCGCAGGACAGCAGGTGCCCGGCT
TCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAGGCTCGGCCTTCCCATCCTGG
GGGACCTCCAGTCTCTGGAGCTCTGGGCGCTGGGCTGGGTACAAACACTTCATTGGCCCAGATGGTGAGC
GGCCTTGTGGGGCAACTTCTTATGCAGCCTGTTCTTGTGGCTCAGGGGACTCCAGGAATGGCTCAGGCTC
AGGCCCAGGCCCAGGCTCAGGCCCAGGCCCAGGCCCAGGCTCCAGCTCCGGCTCCGGCTCCAGCTCCAGC
TCCTGCCACTGCTTCAGCTAGTGCTGGTACTACCAACACAGCTACCACAGCTGGCCCTGCTCCTGGGGGT
CCTGCCCAGCCTCCACCTCCTCAGCCCTCTGCAGCTGATCTTCAGTTCTCTCAGCTCCTGGGAAATCTGC
TGGGGCCTGCAGGGCCAGGGGCTGGGGGGCCAGGCATGGCTTCTCCCACCATCACTGTGGCAATGCCTGG
TGTCCCTGCTTTTCTCCAGGGCATGACTGATTTTTTGCAGGCATCACAGACTGCCCCTCCACCCCCTCCA
CCTCCTCCACCCCCACCCCCTGCCCCAGAGCAGCAGAGCACACCCCCACCAGGGTCTCCTTCTGGTGGAA
CAGCAAGCCCTGGAGGCTTAGGTCCTGAGAGCCTGCCACCAGAGTTTTTCACCTCAGTGGTGCAGGGCGT
GTTGAGCTCCCTCCTGGGCTCCTTGGGGGCTCGAGCTGGCAGCAGTGAGAGTATCGCTGCCTTCATCCAA
CGCCTCAGTGGATCCAGCAACATCTTTGAGCCTGGGGCTGATGGCGCCCTTGGATTCTTCGGAGCTCTGC
TCTCTCTCCTGTGCCAGAATTTCTCCATGGTGGATGTGGTGATGCTTCTCCATGGCCATTTCCAGCCACT
GCAGCGGCTCCAGCCACAGCTGCGATCTTTCTTCCACCAGCACTACCTGGGTGGCCAGGAGCCCACGCCT
AGCAACATCCGGATGGCGACCCACACACTGATCACTGGGCTGGAAGAGTATGTAAGGGAGAGTTTTTCTT
TGGTACAGGTTCAGCCAGGTGTGGATATCATCCGGACAAATTTAGAATTTCTCCAAGAGCAGTTTAACAG
CATTGCTGCTCATGTGCTGCACTGTACAGACAGTGGATTTGGAGCCCGGTTGCTGGAGCTGTGTAACCAG
GGCCTGTTTGAATGCTTGGCCCTGAACCTCCACTGCTTGGGGGGACAGCAAATGGAGCTTGCTGCTGTCA
TCAATGGTCGAATTCGCCGCATGTCTCGCGGGGTGAATCCATCCTTGGTGAGCTGGCTGACAACCATGAT
GGGACTGAGGCTTCAGGTGGTCTTGGAGCACATGCCTGTGGGTCCCGACGCCATCCTCAGATATGTTCGT
AGGGTTGGTGATCCTCCTCAGACACTTCCTGAAGAGCCGATGGAAGTTCAGGGAGCAGAAAGAACTTCCC
CTGAACCTCAGAGAGAGAATGCTTCCCCAGCCCCTGGAACAACAGCAGAAGAAGCCATGTCCCGAGGCCC
GCCCCCTGCTCCTGAAGGAGGTTCCCGAGATGAACAGGATGGAGCTTCAGCTGATGCAGAACCCTGGGCA
GCTGCAGTCCCCCCTGAATGGGTCCCTATTATCCAGCAGGACATTCAGAGCCAGCGGAAGGTGAAACCTC
AGCCGCCCCTGAGTGATGCCTACCTCAGTGGCATGCCTGCCAAGAGACGAAAGCTCCGGTCTGATATCCA
AAAACGACTGCAGGAAGATCCCAACTACAGCCCCCAGCGCTTCCCTAATGCCCATCGGGCATTTGCTGAT
GACCCCTAG

Translation (1122 aa):
MEPSDSASTAMEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDK
KLQEYNVGGKVIHLVERAPPQTQLPSGASSGTGSASATHGGAPLPGTRGPGASVHDRNANSYVMVGTFNL
PSEPRVRLVMAQHMIRDIQTLLSRMECRGGTQAQASQPPPQTPQTVASETVALNSQTSEPVESEAPPREP
MESEEMEERPPTQTPELAPSGPAPAGPAPAGPAPAPETNAPNHPSPAEHVEVLQELQRLQRRLQPFLQRY
CEVLGAAATTDYNNNHEGREEDQRLINLVGESLRLLGNTFVALSDLRCNLACAPPRHLHVVRPMSHYTTP
MVLQQAAIPIQINVGTTVTMTGNGARPPPAPGAEAATPGSAQATSLPPSSTTVDSSTEGAPPPGPAPPPA
SSHPRVIRISHQSVEPVVMMHMNIQDSGAQPGGVPSAPTGPLGPPGHGQTLGSTLIQLPSLPPEFMHAVA
HQITHQAMVAAVASAAAGQQVPGFPTAPTRVVIARPTPPQARPSHPGGPPVSGALGAGLGTNTSLAQMVS
GLVGQLLMQPVLVAQGTPGMAQAQAQAQAQAQAQAQAPAPAPAPAPAPATASASAGTTNTATTAGPAPGG
PAQPPPPQPSAADLQFSQLLGNLLGPAGPGAGGPGMASPTITVAMPGVPAFLQGMTDFLQASQTAPPPPP
PPPPPPPAPEQQSTPPPGSPSGGTASPGGLGPESLPPEFFTSVVQGVLSSLLGSLGARAGSSESIAAFIQ
RLSGSSNIFEPGADGALGFFGALLSLLCQNFSMVDVVMLLHGHFQPLQRLQPQLRSFFHQHYLGGQEPTP
SNIRMATHTLITGLEEYVRESFSLVQVQPGVDIIRTNLEFLQEQFNSIAAHVLHCTDSGFGARLLELCNQ
GLFECLALNLHCLGGQQMELAAVINGRIRRMSRGVNPSLVSWLTTMMGLRLQVVLEHMPVGPDAILRYVR
RVGDPPQTLPEEPMEVQGAERTSPEPQRENASPAPGTTAEEAMSRGPPPAPEGGSRDEQDGASADAEPWA
AAVPPEWVPIIQQDIQSQRKVKPQPPLSDAYLSGMPAKRRKLRSDIQKRLQEDPNYSPQRFPNAHRAFAD
DP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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