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Report for CCDS38810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38810.1 Public Mus musculus 4 Ifna11 23 108 98 CCDS HistoryNCBI Gene:15964Re-query CCDS DB by CCDS ID:38810.1Re-query CCDS DB by GeneID:15964See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38810.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170428.2 ENSMUSP00000127921.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170428.2Link to Ensembl Protein Viewer:ENSMUSP00000127921.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170428Re-query CCDS DB by Protein ID:ENSMUSP00000127921
Original member Current member NCBI NM_008333.2 NP_032359.2 Accepted alive Link to Nucleotide Sequence:NM_008333.2Link to Protein Sequence:NP_032359.2Re-query CCDS DB by Nucleotide ID:NM_008333Re-query CCDS DB by Protein ID:NP_032359Link to BLAST:NP_032359.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032359.2 190 Q61716 190 100% 0 0

Chromosomal Locations for CCDS 38810.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 88819959 88820531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGGCTAGGCTCTGTGCTTTCCTCATGATCTTGATAGTGATGAGCTACTGGTCAACCTGTTCTCTAGGAT
GCGATCTGCCTCACACTTATAACCTCAGGAACAAGAGGGCCTTGAAGGTCCTGGCACAAATGAGGAGGCT
CACCCCTCTTTCCTGCCTAAAGGACAGGAAGGACTTTGGATTCCCCTTGGAGAAGGTGGATGCCCAGCAG
ATCCAGAAGGCTCAATCCATCCCTGTGCTGCGAGATCTTACCCAGCAGATCTTGAACCTCTTCGCATCAA
AGGACTCATCTGCTGCTTGGAATGCAACCCTCCTAGACTCATTCTGCAATGACCTCCACCAGCAGCTCAA
TGACCTGCAAGGTTGTCTGATGCAGCAGGTGGGGGTGCAGGAATCTCCCCTGACCCAGGAAGACTCCCTG
CTGGCTGTGAGGATATACTTCCACAGGATCACTGTGTTCCTGAGAGAGAAGAAACACAGCCCCTGTGCCT
GGGAGGTGGTCAGAGCAGAAGTCTGGAGAGCCCTGTCTTCCTCTGCCAATGTGCTGGGAAGACTGAGAGA
AGAGAAGGCTTGA

Translation (190 aa):
MARLCAFLMILIVMSYWSTCSLGCDLPHTYNLRNKRALKVLAQMRRLTPLSCLKDRKDFGFPLEKVDAQQ
IQKAQSIPVLRDLTQQILNLFASKDSSAAWNATLLDSFCNDLHQQLNDLQGCLMQQVGVQESPLTQEDSL
LAVRIYFHRITVFLREKKHSPCAWEVVRAEVWRALSSSANVLGRLREEKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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