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Report for CCDS49696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49696.1 Public Mus musculus 15 Trabd 23 108 98 CCDS HistoryNCBI Gene:67976Re-query CCDS DB by CCDS ID:49696.1Re-query CCDS DB by GeneID:67976See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49696.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081702.11 ENSMUSP00000080403.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081702.11Link to Ensembl Protein Viewer:ENSMUSP00000080403.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000081702Re-query CCDS DB by Protein ID:ENSMUSP00000080403
Original member Current member EBI ENSMUST00000165690.1 ENSMUSP00000131228.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165690.1Link to Ensembl Protein Viewer:ENSMUSP00000131228.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165690Re-query CCDS DB by Protein ID:ENSMUSP00000131228
Original member Current member NCBI NM_026485.2 NP_080761.2 Accepted alive Link to Nucleotide Sequence:NM_026485.2Link to Protein Sequence:NP_080761.2Re-query CCDS DB by Nucleotide ID:NM_026485Re-query CCDS DB by Protein ID:NP_080761Link to BLAST:NP_080761.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080761.2 376 Q99JY4 376 100% 0 0

Chromosomal Locations for CCDS 49696.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 89081015 89081044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89081353 89081431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89081951 89082117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89082651 89082791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89084698 89084808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89084903 89085042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89085274 89085446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89085526 89085637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89085756 89085933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGGAGGGAGAGGAGAAGCCAGCTCAAGAGGCTGACGTGGAACCTGTGGTAACAGCAGGCACCTCAGAAG
CAGTGCCAAGGGTGCTTGCTGGAGACCCTCAGAACATCTCTGATGTGGATGCCTTCAACTTGCTCCTGGA
GATGAAACTGAAACGACGGCGTGAACGCCCCAACCTTCCACGTACAGTGACCCAGCTAGTGGCCGAGGAT
GGGAGCAGGGTGTATGTGGTGGGCACTGCTCACTTCAGTGATGATAGCAAGAGAGATGTAGTAAAGACTA
TCCGGGAGGTGCAACCGGATGTGGTCGTGGTGGAGCTCTGTCAGTACCGGGTGTCCATGCTCAAGATGGA
CGAGAGGACGCTGCTGCGAGAGGCCAAGGAGGTCAGCCTGGAGAAGCTGCAGCAGGCTGTCAGGCAGAAT
GGGCTTATGTCTGGACTCATGCAGATGTTGCTGCTGAAGGTGTCTGCTCACATCACTGAGCAGCTGGGCA
TGGCCCCTGGTGGCGAGTTCAGGGAGGCCTTCAAAGAGGCCAGCAAGGTACCATTCTGCAAATTCCACCT
GGGTGACCGACCAATCCCAGTCACCTTTAAGAGGGCCATTGCTGCACTCTCCTTCTGGCAGAAAGTCAAG
CTGGCCTGGGGCCTGTGCTTCCTGTCAGACCCAATCAGCAAAGACGACGTGGAGCGCTGCAAACAGAAGG
ACCTGTTGGAGCAGATGATGGCCGAGATGATTGGGGAGTTTCCTGACCTGCATCGCACCATTGTCTCAGA
GCGTGACGTCTATCTGACCTATATGCTGCGGCAGGCCGCACGGCGCCTTGAGCTTCCCCGCGCCTCTGAT
GCTGAGCCCAGGAAGTGTGTCCCGTCTGTGGTTGTGGGCGTCGTTGGCATGGGGCATGTGCCTGGCATTG
AGAAGAACTGGAGTACCGACCTCAACATCCAGGAGATCATGACAGTCCCCCCACCGTCCATCTCAGGCAG
AGTGTCCCGGGTGGCTGTGAAGGCGGCCTTCTTTGGTCTCCTGGGCTATAGCCTGTACTGGATGGGCCGT
CGGACCCTGAACCTGGTCCTGTCACTGCCTGCTGCACAGTTCTGCCTCCAGAGGGTGAGCGAAGCCCGGC
CAGGCCGGTAG

Translation (376 aa):
MEGEEKPAQEADVEPVVTAGTSEAVPRVLAGDPQNISDVDAFNLLLEMKLKRRRERPNLPRTVTQLVAED
GSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDERTLLREAKEVSLEKLQQAVRQN
GLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVK
LAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASD
AEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPPPSISGRVSRVAVKAAFFGLLGYSLYWMGR
RTLNLVLSLPAAQFCLQRVSEARPGR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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