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Report for CCDS25788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25788.1 Public Mus musculus 12 Cenpo 23 108 98 CCDS HistoryNCBI Gene:52504Re-query CCDS DB by CCDS ID:25788.1Re-query CCDS DB by GeneID:52504See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000140975.7 ENSMUSP00000119136.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000140975.7Link to Ensembl Protein Viewer:ENSMUSP00000119136.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000140975Re-query CCDS DB by Protein ID:ENSMUSP00000119136
Original member Current member NCBI NM_134046.6 NP_598807.2 Accepted alive Link to Nucleotide Sequence:NM_134046.6Link to Protein Sequence:NP_598807.2Re-query CCDS DB by Nucleotide ID:NM_134046Re-query CCDS DB by Protein ID:NP_598807Link to BLAST:NP_598807.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598807.2 298 Q8K015-1 298 100% 0 0

Chromosomal Locations for CCDS 25788.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 4214494 4214630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4215259 4215430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4216519 4216778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4217208 4217322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4231516 4231682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4233531 4233576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGAGTCTGCAAATACTTTGTGTCCAGGCAGGAAGTGCAAAGGAGGTGTTTTAGCTCACCTGGAAAGAC
TAGAGGCTCAAACGAACATATCGAATAGAAAGTCTGAAGAACCAGCAGTTCGTAAAAAGGAAAGTTCTCT
TAGAACCAAGATTCGAGAACTGCGGCAACAACGAGATAAGCTGAGGGCAGAAGTGAAGCAGTGGGGAGCC
AGAGTTAAAGAACCTCCTGCCAAAGAAGACCCAAGCAGAACCGTGATCAGTGAACAGGAAGTTCTGGAAA
GGGAGTGGAGAAATGTGGACGCCATTCTGGAGGCATATCGCTTTACGGGGCTCAGCGGGAAGTTGACCAG
TCGTGGCGTCTGCATGTGCATCAGCACAGCCTTTGAGGGGAACCTACTAGATTCCTACTTTGTGGACCTC
GTCATAGAGAAACCACTCCGGATTCATCACCATTCCGTCCCAGTCTTCATCCCTCTGGAAAAGATAGCCG
CAGCACACCTACAGACTGATGTTCAGCGCTTCCTGTTTAGACTCTGGGAATACCTAAATGCCTACGCGGG
GAGGAAGTACCAGGCAGACCAACTTGAGAGTGACTTCTGCGATGTCCTCACGGGACCTTTGCAGAGAAAC
GCCCTGTGCAACTTGCTGTCGTTCACCTATAAAGTGGAACAGAGATGCCAGACCTTCTCCTTCAGTGCCA
GGTTGCTGTATGAGGACCCCACAGCAGCTCTTCCCACGAATGTCACTGTGACAAGGCCAGGTGTGGAGGC
ATCATCCCCTCCTTGGGAAGAGCACAGAGCATCCCATCAGATGCTCTTCCGTACCAAGCCCCTGCACAAG
GTGTTTGCTTCATTTTCCAAAGAAACCGAAAAGCTGCATTTGAACCTGGTCTCCTGA

Translation (298 aa):
MESANTLCPGRKCKGGVLAHLERLEAQTNISNRKSEEPAVRKKESSLRTKIRELRQQRDKLRAEVKQWGA
RVKEPPAKEDPSRTVISEQEVLEREWRNVDAILEAYRFTGLSGKLTSRGVCMCISTAFEGNLLDSYFVDL
VIEKPLRIHHHSVPVFIPLEKIAAAHLQTDVQRFLFRLWEYLNAYAGRKYQADQLESDFCDVLTGPLQRN
ALCNLLSFTYKVEQRCQTFSFSARLLYEDPTAALPTNVTVTRPGVEASSPPWEEHRASHQMLFRTKPLHK
VFASFSKETEKLHLNLVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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