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Report for CCDS23140.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23140.2 Public Mus musculus 9 Sik3 23 108 98 CCDS HistoryNCBI Gene:70661Re-query CCDS DB by CCDS ID:23140.2Re-query CCDS DB by GeneID:70661See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 23140.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 23140.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000126865.7 ENSMUSP00000121032.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126865.7Link to Ensembl Protein Viewer:ENSMUSP00000121032.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126865Re-query CCDS DB by Protein ID:ENSMUSP00000121032
Original member Current member NCBI NM_027498.3 NP_081774.3 Accepted alive Link to Nucleotide Sequence:NM_027498.3Link to Protein Sequence:NP_081774.3Re-query CCDS DB by Nucleotide ID:NM_027498Re-query CCDS DB by Protein ID:NP_081774Link to BLAST:NP_081774.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081774.3 1369 Q6P4S6-1 1369 100% 0 0

Chromosomal Locations for CCDS 23140.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 46012858 46013130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46123217 46123333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46127010 46127073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46155379 46155540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46177872 46177996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46178432 46178555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46194163 46194281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46194820 46194930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46195166 46195309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46195793 46195870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46195984 46196093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46198147 46198300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46198552 46198707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46202000 46202070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46204206 46204349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46207922 46208072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46208718 46208843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46209064 46209149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46209555 46209664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46210476 46210815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46211670 46212562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46219426 46219589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46220210 46220342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46221067 46221221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4110 nt):
ATGGCGGCGGCGGCGGCGAGCGGAGCTGGCGGGGTTGCCGTGGCCGGAGCAGGGGGAGCCGGGCCGGCCG
GCCGCCTGCTGCCTCCGCCCGCCGCGGGGCCCCCGGCAGCCCCCGCCGCAGTGCCCCCGGCCGCCGTCCC
GGCGCGTCCCACAGCCCCGGCCTCCCGCGGGTCGATGGCCGCTCGCATCGGCTACTACGAGATCGACCGC
ACCATCGGCAAGGGCAACTTCGCTGTGGTCAAGCGGGCCACGCACCTCGTCACCAAGGCCAAGGTTGCTA
TTAAAATCATAGATAAGAGCCAGCTGGATGAAGAAAACTTGAAGAAGATTTTCCGGGAGGTTCAGATAAT
GAAGATGCTTTGCCATCCACACATCATCAGACTCTACCAGGTCATGGAGACAGAGCGCATGATTTACCTG
GTGACAGAATACGCTAGCGGAGGGGAGATATTTGACCACTTGGTAGCCCATGGAAGAATGGCAGAGAAGG
AAGCTCGACGGAAGTTCAAACAGATCGTCACAGCGGTGTATTTTTGTCACTGTCGGAATATCGTTCATCG
TGATTTAAAAGCCGAAAACTTACTTCTGGACGCCAATCTGAATATCAAAATAGCAGACTTTGGCTTCAGC
AACCTCTTCACTCCAGGGCAGCTGCTGAAGACGTGGTGTGGCAGCCCTCCCTATGCCGCCCCAGAGCTCT
TCGAAGGGAAGGAATATGATGGGCCCAAAGTGGACATATGGAGCCTTGGAGTTGTCCTCTATGTGCTGGT
GTGTGGCGCCCTGCCGTTTGATGGGAGCACACTGCAGAATCTGCGGGCCCGCGTGCTGAGTGGCAAGTTC
CGCATCCCGTTCTTTATGTCCACAGAGTGTGAGCACTTGATCCGCCACATGCTGGTGTTAGATCCAAATA
AGCGCCTCTCAATGGAACAGATCTGCAGGCACAAGTGGATGAAGCTCGGAGATGCAGACCCCAACTTTGA
CAGGTTAATAGCGGAGTGCCAGCAACTGAAGGAGGAAAGGCAGTCGGACCCCCTCAACGATGATGTCCTC
TTGGCTATGGAAGACATGGGGCTGGACAAGGAGCGCACACTTCAGTCATTAAGGTCAGATGCCTATGACC
ACTATAGTGCAATCTACAGCCTGCTGTGCGATCGACACAAGAAACATAAAACTCTGCGTCCCGGAGCACT
TCCCAGCATGCCCCAAGCCATGACTTTCCAGGCACCAGTCAATCTCCAGGCGGAGCAGACAGGCACTGCT
ATGAACCTTAGCGTCCCTCAAGTTCAGCTGATCAACCCAGAGAACCAAATTATAGAGCCTGACGGGGCTG
TGAACTTGGACAGTGATGAGGGTGAAGAGCCTTCTCCAGAAGCCTTGGTTCGCTATTTGTCAATGAGGAG
GCACACGGTGGGAGTGGCTGACCCACGCACGGAAGTTATGGAAGATCTGCAGAAGCTGCTGCCTGGCTTT
CCTGGAGTAAACCCACAGGGTCCATTCCTACAAGTGGCCCCTAACATGAACTTCACGCACAACCTGTTGC
CCATGCAGAGTCTGCAGCCAACTGGGCAGCTTGAGTACAAGGAACAGTCTCTGTTACAGCCGCCTACACT
ACAGCTACTGAACGGAATGGGGCCCCTTGGCCGGAGAGCCTCAGATGGAGGCGCCAACATCCAACTGCAT
GCCCAGCAGCTGCTCAAGCGCCCACGGGGACCGTCCCCACTTGTCACCATGACACCAGCAGTGCCAGCAG
TTACCCCTGTGGATGAGGAGAGCTCGGATGGGGAGCCAGATCAGGAAGCTGTGCAGAGGTACTTGGCAAA
TAGGTCCAAAAGGCACACACTGGCCATGACCAGCCCGACAGCTGAGATCCCACCGGACCTGCAACGGCAG
CTAGGACAACAGTCTTTCCGTTCCCGGGTCTGGCCTCCTCACCTGGTACCTGACCAGCATCGCTCCACCT
ACAAGGACTCCAACACCCTGCATCTCCCTACGGAGCGTTTCTCCCCCGTGCGCCGGTTCTCAGACGGGGC
TGCAAGCATCCAGGCCTTCAAAGCTCACCTGGAAAAAATGGGCAACAGCAGCAGCATCAAGCAGTTGCAG
CAGGAGTGTGAGCAGCTGCAGAAGATGTACGGGGGGCAGGTGGATGAGAGGACCCTGGAGAAGACCCAGC
AGCAGCATATGTTGTACCAGCAGGAGCAGCACCATCAGATCCTCCAGCAGCAAATCCAAGATTCTATTTG
TCCTCCTCAGCCCTCCCCACCTCTTCAGGTTGCCTGTGAAAACCAACCAGCCCTCCTCACCCACCAGCTC
CAGAGGTTAAGGATTCAACCTTCAAGCCCACCCCCCAACCATCCCAGCAACCATCTCTTCAGACAGCCAA
GTAACAGTCCTCCCCCGGTCAGCAGTGCCATGATCACGTCTCACGGTGCTACGTCTCCCTCCCAGTTTCA
AGGCTTACCCTCCCATGGTGCAATCTTCCAGCAGCAACCCGAGAACTGTTCCCCGCCTCCCAGTGTAGCA
CTAACCTGCCTGGGCCTACAGCAGGCTAGCCAGTCACAGCCAGTGACTATCCAGCTACAGGAGCCAGTTG
ACATGCTCAGCAACATGGCCGGAACCGCGGCAGGCTCTGCAGGGCGGAGCATCCCCATCAGCCCCAGCGC
CAGTCAGATTCAGATACAGCACCGAGCCAGCCTAATGGCTCCCTTCAGCTATGGGCACCGGCCCTTGTCC
AAGCAGCTGAGCGCTGACAGTGCAGAGGCCCACAGCTTGAACATGAATCGGTTCTCCCCTGCCAACTACG
ACCAGGCGCATTTACACCCCCATCTGTTTTCGGACCAGTCCCGAGGTTCCCCCAGCAGCTACAGCCCTTC
AACAGGAGTGGGGTTTCCTCCAACTCAAGCCCTGAAAGTTCCTCCGCTTGACCAGTTCCCCACTTTCCCT
CCCAGTGCCCAGCAGCAGCCACCCCACTATACCACGTCAGCACTACAGCAGGCCCTGCTATCTCCTACAC
CGCCAGACTATCCCCGACACCAGCAGGTTCCCCATATCCTTCAAGGACTGCTCTCTCCCCGGCATTCACT
CACCGGCCACTCGGACATTCGGCTGCCTCCGGCAGAGTTTGCACAGCTCATCAAAAGGCAGCAACAGCAT
CGACAGCAGCAGCAGCAGCAGCAGCAGCAACAAGAATACCATGAATTGTTCAGGCACATGAACCAAGGGG
ATGCTGTTAGCCTAGCTCCCAGCCTCGGGGGACAGAATATGACAGAGCAACAGGCTTTATCTTATCAAAA
TGCTGACTCGTACCACCGCCACCACACCAGCCCCCAGCATATCTTACAGATCAGGGCGCAAGATTGTATC
TCACAGGGTCCCTCGCCCACCCCCACCCATGGCTATGCCCATCAGCCACCACTAATGCATTCGGAGAGTA
TGGAGGAAGACTGCTTGTGTGAGGGGCTCAAGGAGGGCTTCCCAGACAAGAGCTCAAGCACACTGACCAA
AGGTTGCCACAACAGCCCTCTGCTCTTGTGTACCAGTGGGCCTGGGGACCCTGAGCCTTTGCTGGGAACT
GTGAGTCAGGCCCGGGAGCTGGGGATCCATCCCTACGGACACCAGCCAACTGCCACCACGTTCAGTAGAA
ATAAGGTGCCCAGCCGAGAGTCTGTCCTAGGGAACTGCCTGGAAAGAAGTTCTCCTGGACAAGCAATGGA
GCTGCCGGATCACAACGGCCTTGGGTACCCAGTACGGCCCTTAGTCAGTGAGCACCTCAGGTCCCGGACG
CTCCAGAGACACCACACGATCCAGAACAGCGACGATGCCTATGTACAGCTGGATACCTTGCCAGGAATGA
GCCTGGTGGCAGGCAAGGCGCTGAGCTCTGCCCGGATGTCAGATGCAGTTCTTAGTCAGTCTTCACTCAT
GGGCAGCCAACAGTTTCAGGATGAGGAAGATGAAGAATGTGGGGTGAGCCTGGGCCACGAGCATCCAGGC
CTGGGTGATGGCAGCCAGCATCTCAACTCCTCTCGCTATCCAGCTACGTGTGTTACAGACATCATGCTCA
GCCACAAGCACCCAGAGGTCTCCTTCAGCATGGAGCAAGCCGGCGTGTAG

Translation (1369 aa):
MAAAAASGAGGVAVAGAGGAGPAGRLLPPPAAGPPAAPAAVPPAAVPARPTAPASRGSMAARIGYYEIDR
TIGKGNFAVVKRATHLVTKAKVAIKIIDKSQLDEENLKKIFREVQIMKMLCHPHIIRLYQVMETERMIYL
VTEYASGGEIFDHLVAHGRMAEKEARRKFKQIVTAVYFCHCRNIVHRDLKAENLLLDANLNIKIADFGFS
NLFTPGQLLKTWCGSPPYAAPELFEGKEYDGPKVDIWSLGVVLYVLVCGALPFDGSTLQNLRARVLSGKF
RIPFFMSTECEHLIRHMLVLDPNKRLSMEQICRHKWMKLGDADPNFDRLIAECQQLKEERQSDPLNDDVL
LAMEDMGLDKERTLQSLRSDAYDHYSAIYSLLCDRHKKHKTLRPGALPSMPQAMTFQAPVNLQAEQTGTA
MNLSVPQVQLINPENQIIEPDGAVNLDSDEGEEPSPEALVRYLSMRRHTVGVADPRTEVMEDLQKLLPGF
PGVNPQGPFLQVAPNMNFTHNLLPMQSLQPTGQLEYKEQSLLQPPTLQLLNGMGPLGRRASDGGANIQLH
AQQLLKRPRGPSPLVTMTPAVPAVTPVDEESSDGEPDQEAVQRYLANRSKRHTLAMTSPTAEIPPDLQRQ
LGQQSFRSRVWPPHLVPDQHRSTYKDSNTLHLPTERFSPVRRFSDGAASIQAFKAHLEKMGNSSSIKQLQ
QECEQLQKMYGGQVDERTLEKTQQQHMLYQQEQHHQILQQQIQDSICPPQPSPPLQVACENQPALLTHQL
QRLRIQPSSPPPNHPSNHLFRQPSNSPPPVSSAMITSHGATSPSQFQGLPSHGAIFQQQPENCSPPPSVA
LTCLGLQQASQSQPVTIQLQEPVDMLSNMAGTAAGSAGRSIPISPSASQIQIQHRASLMAPFSYGHRPLS
KQLSADSAEAHSLNMNRFSPANYDQAHLHPHLFSDQSRGSPSSYSPSTGVGFPPTQALKVPPLDQFPTFP
PSAQQQPPHYTTSALQQALLSPTPPDYPRHQQVPHILQGLLSPRHSLTGHSDIRLPPAEFAQLIKRQQQH
RQQQQQQQQQQEYHELFRHMNQGDAVSLAPSLGGQNMTEQQALSYQNADSYHRHHTSPQHILQIRAQDCI
SQGPSPTPTHGYAHQPPLMHSESMEEDCLCEGLKEGFPDKSSSTLTKGCHNSPLLLCTSGPGDPEPLLGT
VSQARELGIHPYGHQPTATTFSRNKVPSRESVLGNCLERSSPGQAMELPDHNGLGYPVRPLVSEHLRSRT
LQRHHTIQNSDDAYVQLDTLPGMSLVAGKALSSARMSDAVLSQSSLMGSQQFQDEEDEECGVSLGHEHPG
LGDGSQHLNSSRYPATCVTDIMLSHKHPEVSFSMEQAGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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