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Report for CCDS37512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37512.1 Public Mus musculus 17 Fam234a 23 108 98 CCDS HistoryNCBI Gene:106581Re-query CCDS DB by CCDS ID:37512.1Re-query CCDS DB by GeneID:106581See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37512.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114988.7 ENSMUSP00000110639.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114988.7Link to Ensembl Protein Viewer:ENSMUSP00000110639.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114988Re-query CCDS DB by Protein ID:ENSMUSP00000110639
Original member Current member EBI ENSMUST00000118487.7 ENSMUSP00000113418.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118487.7Link to Ensembl Protein Viewer:ENSMUSP00000113418.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118487Re-query CCDS DB by Protein ID:ENSMUSP00000113418
Original member Current member EBI ENSMUST00000234175.1 ENSMUSP00000157032.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234175.1Link to Ensembl Protein Viewer:ENSMUSP00000157032.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234175Re-query CCDS DB by Protein ID:ENSMUSP00000157032
Original member Current member EBI ENSMUST00000234262.1 ENSMUSP00000157155.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234262.1Link to Ensembl Protein Viewer:ENSMUSP00000157155.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234262Re-query CCDS DB by Protein ID:ENSMUSP00000157155
Original member Current member EBI ENSMUST00000234687.1 ENSMUSP00000157219.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234687.1Link to Ensembl Protein Viewer:ENSMUSP00000157219.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234687Re-query CCDS DB by Protein ID:ENSMUSP00000157219
Original member Current member EBI ENSMUST00000234554.1 ENSMUSP00000157362.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234554.1Link to Ensembl Protein Viewer:ENSMUSP00000157362.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234554Re-query CCDS DB by Protein ID:ENSMUSP00000157362
Original member NCBI NM_001206335.1 NP_001193264.1 Updated not alive Link to Nucleotide Sequence:NM_001206335.1Link to Protein Sequence:NP_001193264.1Re-query CCDS DB by Nucleotide ID:NM_001206335Re-query CCDS DB by Protein ID:NP_001193264
Current member NCBI NM_001206335.2 NP_001193264.1 Accepted alive Link to Nucleotide Sequence:NM_001206335.2Link to Protein Sequence:NP_001193264.1Re-query CCDS DB by Nucleotide ID:NM_001206335Re-query CCDS DB by Protein ID:NP_001193264Link to BLAST:NP_001193264.1
Original member NCBI NM_001357894.1 NP_001344823.1 Updated not alive Link to Nucleotide Sequence:NM_001357894.1Link to Protein Sequence:NP_001344823.1Re-query CCDS DB by Nucleotide ID:NM_001357894Re-query CCDS DB by Protein ID:NP_001344823
Current member NCBI NM_001357894.2 NP_001344823.1 Accepted alive Link to Nucleotide Sequence:NM_001357894.2Link to Protein Sequence:NP_001344823.1Re-query CCDS DB by Nucleotide ID:NM_001357894Re-query CCDS DB by Protein ID:NP_001344823Link to BLAST:NP_001344823.1
Original member NCBI NM_207217.4 NP_997100.1 Updated not alive Link to Nucleotide Sequence:NM_207217.4Link to Protein Sequence:NP_997100.1Re-query CCDS DB by Nucleotide ID:NM_207217Re-query CCDS DB by Protein ID:NP_997100
Current member NCBI NM_207217.5 NP_997100.1 Accepted alive Link to Nucleotide Sequence:NM_207217.5Link to Protein Sequence:NP_997100.1Re-query CCDS DB by Nucleotide ID:NM_207217Re-query CCDS DB by Protein ID:NP_997100Link to BLAST:NP_997100.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193264.1 555 Q8C0Z1 555 100% 0 0
NP_001344823.1 555 Q8C0Z1 555 100% 0 0
NP_997100.1 555 Q8C0Z1 555 100% 0 0

Chromosomal Locations for CCDS 37512.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 26213506 26213717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26213804 26213906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26214328 26214483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26214652 26214727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26215185 26215325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26216189 26216318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26216559 26216691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26217294 26217430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26218124 26218318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26218635 26218751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26220281 26220548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGATGGACAACAAGGACTTAGAAGCTGAAATACACCCCTTGAAGAATGAGGACAAGAAATCACAGGAAA
ACCCAGGAAACCTACCAAGAAACGAAGATAACTTGAAGAGCAAGCCTGTGCCTTCCCGCTTGTCCCGGTG
CCGCACAGTGGCATTTTTCCTTTCCCTGTTCACCTGCCTCTTCGTGGTGTTTGTCCTGTCTTTCATCATC
CCATGTCCAGACCGTCCCTCCTCACAGGGCACGTGGAAGCTTGACTACAACAATGCAGTCATGTACGACT
TCCTGGCTCTGGGAGACATAAACAAGGACAAGGTTCAGGACGTTCTTTTTCTTTACAAAAATACCAACAG
CAGTAACAATCTCACCAGATCCTGTGCTGATGAAGGCTTTTCCACTCCTTGTGCCTTTGTGGTTGCGGTG
TCAGGAGCCAATGGCAGCGTGCTCTGGGAGAGACCCGTGGCCCAAGATGTCGCCCTTGTAAAGTGTGCCA
TGCCACAGACACTGGACAGTGACGAGGTGTCTTCTGCCTGTATCGTTGTGGGAAGAGCTGGTTCTTTCGT
TGCGGTCAGCTTTTTTACAGGAGAAACCCTGTGGAGCCATCCCAGCAGCTTTAGTGGGAACGTTTCCATC
CTGAGCCCTCTGCTCCAGGTGCCTGACATTGATGGTGATGGTGACGGTACTCCAGACCTCCTGATCCTCG
CCCAGGAGGGACAGGAGGTCAGTGGAGCTCTCTATTCAGGTAGCACTGGGTACCAGATTGGCCACAGAGG
CAGCCTTGGTGTGGATGGAGATGGTGTCGCCCTCCTTCATGTGACCAGAACTGGTGCTCAGTATATTCTC
CTGCCCTGTGCAAGTGCCCTCTGTGGCTTCTCTGTGAAGAGTCTCTATGAGAGAATTACTGGGCGAGATG
GCCATTTTAAGGAAGACCCCTACTGGGAGAACATGCTCAATCACTCTGTCCACAGGAGGCTTCTGCACAG
ACTTGGAGCAGTTCGCTACCTGATGAATATCCCAGGGAAAGCTGGCCAGGACTTGCTCCTTGTGACCTCT
GAGGCCTGCGTGTTGCTGGATGGACAGGATCTGGAGCCCAGGTGGACCCTTGGTGAAGTTCAGGTTCTGA
GAAAACCTATCCTTGGCCACTACAAACCTGACACCTTGGCTGTGGTCATTGAGAATGGAACCAGCATTGA
TAGACAGATCCTACTTCTGGACCTCAGTACTGGGTCTATCCTGTGGAGCCAGCCCCTCCCAAGCCTGCCT
GGGGGCCCACCATCCACAAGCCTGATGACTGCAGACCACCGCTCAGCCTTCTTCTTCTGGGGCCTCCATG
ATCTTGTGAGCACTAATGAGATGGATCCCCCGGATGTGCAGCACAGTCTGTATATGTTCCACCCGACCCT
GCCTGGCATCCTGCTGGAGCTAGCCAACGTGTCTGCCAACATCGTGGCCTTTGATGCCGTCCTGCTTGAG
CCAAGCCGCCATGCTGCCTATGTGCTCCTGACGGGCCCAGCAAGCTCAGATGTGCCTGGCCTGGTCTCTG
TCACCAAACACAAAGTGCAAGACCTTGTCCCAGGCAGTAGAGTGATCCACTTGGGTGAAGGCAGCTCAGA
CAGCGACCAGGCTATCCGGGACCGGTTCTCCCGACTACGGTACCGGAGTGAGATGTAG

Translation (555 aa):
MMDNKDLEAEIHPLKNEDKKSQENPGNLPRNEDNLKSKPVPSRLSRCRTVAFFLSLFTCLFVVFVLSFII
PCPDRPSSQGTWKLDYNNAVMYDFLALGDINKDKVQDVLFLYKNTNSSNNLTRSCADEGFSTPCAFVVAV
SGANGSVLWERPVAQDVALVKCAMPQTLDSDEVSSACIVVGRAGSFVAVSFFTGETLWSHPSSFSGNVSI
LSPLLQVPDIDGDGDGTPDLLILAQEGQEVSGALYSGSTGYQIGHRGSLGVDGDGVALLHVTRTGAQYIL
LPCASALCGFSVKSLYERITGRDGHFKEDPYWENMLNHSVHRRLLHRLGAVRYLMNIPGKAGQDLLLVTS
EACVLLDGQDLEPRWTLGEVQVLRKPILGHYKPDTLAVVIENGTSIDRQILLLDLSTGSILWSQPLPSLP
GGPPSTSLMTADHRSAFFFWGLHDLVSTNEMDPPDVQHSLYMFHPTLPGILLELANVSANIVAFDAVLLE
PSRHAAYVLLTGPASSDVPGLVSVTKHKVQDLVPGSRVIHLGEGSSDSDQAIRDRFSRLRYRSEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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