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Report for CCDS51652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51652.1 Public Mus musculus 5 Fzd10 23 108 98 CCDS HistoryNCBI Gene:93897Re-query CCDS DB by CCDS ID:51652.1Re-query CCDS DB by GeneID:93897See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51652.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117102.3 ENSMUSP00000114114.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117102.3Link to Ensembl Protein Viewer:ENSMUSP00000114114.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000117102Re-query CCDS DB by Protein ID:ENSMUSP00000114114
Original member Current member NCBI NM_175284.3 NP_780493.1 Accepted alive Link to Nucleotide Sequence:NM_175284.3Link to Protein Sequence:NP_780493.1Re-query CCDS DB by Nucleotide ID:NM_175284Re-query CCDS DB by Protein ID:NP_780493Link to BLAST:NP_780493.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780493.1 582 Q8BKG4 582 100% 0 0

Chromosomal Locations for CCDS 51652.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 128601218 128602966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGCAACACCCGGGCCCGCGCCTGTGGCTGGTGCTGCAGGTGATGATAGGCTCGTGCACGGCCATCAGCT
CCATGGACTTAGAGCGCCCTGGAGACGGCAAGTGCCAGCCGGTGGAGATTCCCATGTGCAAGGACATCGG
CTACAACACCACCCGCATGCCCAACCTGATGGGTCACGAGAACCAGCGCGAGGCGGCCATCCAACTGCAC
GAGTTCGCGCCGCTCGTGGAGTACGGCTGCCACAGCCACCTTCGCTTCTTCCTGTGTTCGCTGTACGCGC
CCATGTGCACCGAGCAGGTCTCCACACCCATCCCTGCTTGCCGGGTCATGTGCGAGCAGGCCCGGCTCAA
GTGCTCGCCGATCATGGAGCAGTTCAAATTCAGGTGGCCGGACTCCCTGGATTGCAGCAAGCTCCCCAAC
AAGAACGACCCCAACTACCTGTGCATGGAGGCACCCAACAACGGCTCGGATGAGCCCAGCCGGGGCTCTG
GCATGTTTCCTCCGCTCTTCAGGCCCCAGAGGCCCCACAGCGCGCAGGAGCACCCACTAAAGGACGGGGG
TCCGGGGCGCGCAGGTTGTGACAACCCAGGCAAGTTCCACCATGTGGAGAAGAGCGAATCTTGCGCACCG
CTTTGCACTCCGGGGGTGGATGTGTATTGGAGCCGCGACGACAAGCGCTTCGCTGTGGTCTGGCTGGCCA
TCTGGTCCGTGCTGTGCTTCTTCTCCAGCGCCTTCACCGTGCTCACCTTCCTCATCGACCCATCGCGCTT
CAGGTACCCCGAACGTCCTATCATCTTCCTCTCCATGTGCTACTGCGTTTATTCGGTGGGCTATATCATC
CGCCTCTTCGCGGGCGCGGAGAGCATCGCTTGTGACCGGGACAGTGGGCAGCTGTATGTTATCCAGGAAG
GACTGGAGAGCACGGGCTGTACCTTAGTCTTCTTGGTACTTTACTACTTCGGCATGGCCAGCTCTTTATG
GTGGGTGGTCCTCACCCTCACTTGGTTCCTGGCTGCTGGAAAGAAGTGGGGCCATGAGGCCATTGAAGCC
AACAGCAGCTACTTTCACCTGGCAGCTTGGGCCATCCCGGCTGTGAAGACTATCTTGATCTTGGTGATGC
GCAGGGTGGCAGGGGATGAGCTCACTGGTGTGTGTTATGTGGGCAGCATGGATGTCAATGCTCTGACCGG
CTTCGTGCTGGTCCCGCTGGCTTGCTACCTAGTCATCGGCACTTCCTTCATCCTGTCCGGCTTTGTGGCT
TTATTCCACATCCGGAGGGTGATGAAAACGGGTGGGGAGAACACGGACAAGCTGGAGAAGCTCATGGTAC
GCATAGGGGTCTTCTCCCTCCTCTACACTGTGCCGGCCACCTGTGTGATTGCCTGCTATTTTTATGAACG
CCTCAACATGGACTACTGGAAGATGCTGGCCACCCAGCACAAGTGTAAGATGAACAATCAGACCAAGACA
CCTGACTGCCTGATGACCACCTCCATCCCTGCCGTGGAGGTCTTCATGGTCAAAGTGTCCATGCTGCTGG
TGGTGGGCATCACCAGTGGGGTGTGGGTCTGGACTTCCAAGACCCTGCAGTCCTGGCAACACGTATGCAG
CCGGGGGCTAAAGAGAAAAAGCCGGAGGAAACCAGCCAGTGTGGTCACCAGTGCAGGGATCTACAAAAAA
GCCCAGCACCCCCAAAAACCTCACCTTGGGAAGTATGAACTGCCCGCCCAGCCTTCAGCCTGCGTGTGA

Translation (582 aa):
MQHPGPRLWLVLQVMIGSCTAISSMDLERPGDGKCQPVEIPMCKDIGYNTTRMPNLMGHENQREAAIQLH
EFAPLVEYGCHSHLRFFLCSLYAPMCTEQVSTPIPACRVMCEQARLKCSPIMEQFKFRWPDSLDCSKLPN
KNDPNYLCMEAPNNGSDEPSRGSGMFPPLFRPQRPHSAQEHPLKDGGPGRAGCDNPGKFHHVEKSESCAP
LCTPGVDVYWSRDDKRFAVVWLAIWSVLCFFSSAFTVLTFLIDPSRFRYPERPIIFLSMCYCVYSVGYII
RLFAGAESIACDRDSGQLYVIQEGLESTGCTLVFLVLYYFGMASSLWWVVLTLTWFLAAGKKWGHEAIEA
NSSYFHLAAWAIPAVKTILILVMRRVAGDELTGVCYVGSMDVNALTGFVLVPLACYLVIGTSFILSGFVA
LFHIRRVMKTGGENTDKLEKLMVRIGVFSLLYTVPATCVIACYFYERLNMDYWKMLATQHKCKMNNQTKT
PDCLMTTSIPAVEVFMVKVSMLLVVGITSGVWVWTSKTLQSWQHVCSRGLKRKSRRKPASVVTSAGIYKK
AQHPQKPHLGKYELPAQPSACV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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