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Report for CCDS17008.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
17008.1 |
Public |
Mus musculus |
2 |
Jph2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:59091](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:17008.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:59091](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 17008.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000017961.10 |
ENSMUSP00000017961.4 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000017961.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000017961.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000017961](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000017961](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000109425.2 |
ENSMUSP00000105052.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000109425.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000105052.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000109425](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000105052](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001205076.1 |
NP_001192005.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001205076.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001192005.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001205076](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001192005](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001192005.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_021566.2 |
NP_067541.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_021566.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_067541.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_021566](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_067541](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_067541.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 17008.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2091 nt): ATGAGCGGGGGCCGCTTTGACTTTGATGATGGCGGGGCGTATTGTGGGGGCTGGGAAGGGGGAAAGGCAC ACGGGCACGGACTGTGCACCGGCCCCAAGGGCCAGGGTGAATACTCGGGCTCCTGGAATTTTGGCTTTGA AGTGGCAGGCGTCTATACCTGGCCCAGTGGGAATACCTTTGAGGGATATTGGAGCCAGGGCAAACGACAT GGGCTTGGCATAGAGACCAAGGGGCGCTGGCTCTACAAGGGGGAGTGGACGCATGGCTTTAAGGGGCGCT ACGGAATCCGGCAGAGCACAAACAGTGGTGCCAAGTACGAGGGCACTTGGAATAACGGCCTACAGGACGG CTATGGCACGGAGACCTACGCAGACGGAGGAACCTATCAAGGCCAATTCACCAACGGCATGCGCCATGGC TACGGTGTGCGCCAAAGCGTGCCCTACGGGATGGCAGTGGTGGTGCGTTCTCCGCTGCGCACTTCTCTGT CCTCGCTGCGCAGCGAGCACAGCAATGGAACGGTGGCTCCGGACTCACCGGCGGCAGATGGGCCCATGCT GCCTTCGCCCCCAGTGCCGCGCGGTGGTTTCGCGCTCACTCTGCTGGCCACAGCAGAGGCCGCGCGACCC CAAGGGCTGTTCACGCGTGGCACACTGCTGGGTCGGCTGCGACGCTCAGAATCACGCACATCACTGGGCA GCCAGCGGAGCCGCTTGAGCTTTCTCAAGAGCGAGCTGAGTTCCGGAGCCAGCGATGCCGCATCCACTGG CAGCCTGGCCGAGGGCGCTGAGGGCCCCGACGACGCGGCTGCGCCCTTCGATGCCGACATCGACGCCACC ACCACGGAAACCTACATGGGCGAGTGGAAGAACGACAAGCGCTCGGGCTTCGGCGTGAGCGAGCGTTCCA GCGGCCTGCGCTACGAGGGCGAGTGGCTGGACAACCTGCGCCACGGCTACGGCCGCACCACGCTGCCCGA CGGCCACCGCGAGGAGGGCAAGTACCGCCACAATGTGCTGGTCAAGGGCACCAAGCGCCGCGTGCTGCCG CTCAAGAGCAGCAAGGTCCGCCAGAAGGTGGAGCACGGGGTGGAGGGCGCCCAGCGCGCAGCAGCCATCG CGCGCCAGAAGGCCGAGATTGCCGCCTCCAGGACAAGCCATGCCAAAGCCAAGGCAGAGGCAGCAGAACA GGCTGCCCTGGCTGCCAACCAGGAGTCCAACATCGCCCGTACATTGGCCAAGGAGCTGGCTCCAGACTTC TACCAGCCAGGTCCGGAGTATCAGAAGCGTCGGCTGCTCCAGGAGATCCTGGAGAACTCTGAGAGCTTGC TGGAGCCCCCAGAGCGGGGTCTGGGCACCGGCCTCCCGGAGCGGCCCCGGGAAAGCCCGCAGCTGCATGA GCGCGAGACCCCGCAGCCCGAGGGCGGACCCCCGTCTCCGGCCGGGACGCCCCCGCAACCCAAGAGGCCC CGGCCCGGAGCGTCAAAGGACGGCCTGCTGAGTCCAGGCTCCTGGAACGGGGAGCCCGGCGGAGAGGGCA GCCGGCCCGCCACGCCGTCGGATGGCGCCGGTCGTCGCAGCCCCGCGCGCCCCGCCTCGGAGCACATGGC CATCGAGGCGCTGCAGCCGCCGCCCGCGCCCTCGCAGGAGCCCGAGGTAGCAATGTACCGCGGCTACCAT AGCTACGCCGTGCGCACCGGGCCACCCGAGCCTCCGCCCTTGGAGGATGAGCAGGAGCCCGAGCCGGAGC CCGAGCCCGAGGTCCGGCGATCCGACTCGGCGCCCCCGTCCCCCGTCTCCGCCACCGTCCCGGAGGAGGA GCCCCCTGCGCCGCGAAGCCCGGTGCCTGCCAAGCAAGCCACTCTGGAGCCCAAGCCCATCGTCCCCAAA GCAGAGCCCAAGGCCAAGGCGCGCAAGACAGAGGCCCGAGGACTGAGCAAGGCCGGTGCCAAGAAGAAGG GCCGTAAGGAAGTGGCGCAGGCGAAGGAGGCCGAGGTGGAGGTGGAGGAGGTACCCAACACCGTCCTCAT CTGTATGGTGATCTTGCTGAACATCGGCCTGGCTATCCTATTTGTTCACCTCCTGACTTGA
Translation (696 aa): MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNTFEGYWSQGKRH GLGIETKGRWLYKGEWTHGFKGRYGIRQSTNSGAKYEGTWNNGLQDGYGTETYADGGTYQGQFTNGMRHG YGVRQSVPYGMAVVVRSPLRTSLSSLRSEHSNGTVAPDSPAADGPMLPSPPVPRGGFALTLLATAEAARP QGLFTRGTLLGRLRRSESRTSLGSQRSRLSFLKSELSSGASDAASTGSLAEGAEGPDDAAAPFDADIDAT TTETYMGEWKNDKRSGFGVSERSSGLRYEGEWLDNLRHGYGRTTLPDGHREEGKYRHNVLVKGTKRRVLP LKSSKVRQKVEHGVEGAQRAAAIARQKAEIAASRTSHAKAKAEAAEQAALAANQESNIARTLAKELAPDF YQPGPEYQKRRLLQEILENSESLLEPPERGLGTGLPERPRESPQLHERETPQPEGGPPSPAGTPPQPKRP RPGASKDGLLSPGSWNGEPGGEGSRPATPSDGAGRRSPARPASEHMAIEALQPPPAPSQEPEVAMYRGYH SYAVRTGPPEPPPLEDEQEPEPEPEPEVRRSDSAPPSPVSATVPEEEPPAPRSPVPAKQATLEPKPIVPK AEPKAKARKTEARGLSKAGAKKKGRKEVAQAKEAEVEVEEVPNTVLICMVILLNIGLAILFVHLLT
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