NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20758.1 Public Mus musculus 7 Epn1 23 108 98 CCDS HistoryNCBI Gene:13854Re-query CCDS DB by CCDS ID:20758.1Re-query CCDS DB by GeneID:13854See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20758.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045277.6 ENSMUSP00000043340.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045277.6Link to Ensembl Protein Viewer:ENSMUSP00000043340.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000045277Re-query CCDS DB by Protein ID:ENSMUSP00000043340
Original member Current member EBI ENSMUST00000098845.9 ENSMUSP00000096445.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098845.9Link to Ensembl Protein Viewer:ENSMUSP00000096445.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098845Re-query CCDS DB by Protein ID:ENSMUSP00000096445
Original member NCBI NM_001252454.1 NP_001239383.1 Updated not alive Link to Nucleotide Sequence:NM_001252454.1Link to Protein Sequence:NP_001239383.1Re-query CCDS DB by Nucleotide ID:NM_001252454Re-query CCDS DB by Protein ID:NP_001239383
Current member NCBI NM_001252454.2 NP_001239383.1 Accepted alive Link to Nucleotide Sequence:NM_001252454.2Link to Protein Sequence:NP_001239383.1Re-query CCDS DB by Nucleotide ID:NM_001252454Re-query CCDS DB by Protein ID:NP_001239383Link to BLAST:NP_001239383.1
Original member NCBI NM_010147.4 NP_034277.1 Updated not alive Link to Nucleotide Sequence:NM_010147.4Link to Protein Sequence:NP_034277.1Re-query CCDS DB by Nucleotide ID:NM_010147Re-query CCDS DB by Protein ID:NP_034277
Current member NCBI NM_010147.5 NP_034277.1 Accepted alive Link to Nucleotide Sequence:NM_010147.5Link to Protein Sequence:NP_034277.1Re-query CCDS DB by Nucleotide ID:NM_010147Re-query CCDS DB by Protein ID:NP_034277Link to BLAST:NP_034277.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239383.1 575 Q80VP1-1 575 100% 0 0
NP_034277.1 575 Q80VP1-1 575 100% 0 0

Chromosomal Locations for CCDS 20758.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 5083755 5083982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5089919 5090168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5092841 5092965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5093312 5093386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5093899 5093982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5094954 5095257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5095643 5095753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5095891 5095974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5097154 5097411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5097572 5097780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGTCGACCTCATCGCTGCGGCGTCAGATGAAGAATATCGTCCACAACTACTCAGAGGCTGAGATCAAGG
TCCGCGAGGCCACAAGCAATGATCCCTGGGGCCCATCCAGCTCCCTCATGTCAGAGATTGCTGACCTCAC
CTACAATGTTGTGGCCTTCTCCGAGATCATGAGCATGATCTGGAAGCGGCTCAATGACCACGGCAAGAAC
TGGAGGCACGTCTACAAGGCCATGACGTTGATGGAGTACCTCATCAAGACTGGCTCTGAGCGTGTATCAC
AACAGTGCAAAGAGAACATGTATGCTGTGCAGACGCTGAAGGACTTCCAGTATGTGGACCGTGATGGCAA
GGACCAGGGTGTGAATGTGCGGGAGAAGGCCAAGCAGCTGGTGGCTTTGCTGCGTGATGAGGATCGGCTC
CGGGAGGAGCGCGCCCACGCGCTCAAGACCAAGGAGAAGCTGGCACAGACTGCCACGGCCTCCTCAGCAG
CCGTGGGCTCTGGACCACCTCCCGAGGCGGAGCAGGCATGGCCACAGAGCAGCGGGGAGGAGGAGTTGCA
GCTCCAGCTGGCCCTGGCTATGAGCAAGGAGGAGGCCGACCAGCCCCCGTCCTGCGGCCCTGAGGATGAC
GTCCAGCTCCAGCTGGCCCTTAGTTTGAGCCGAGAGGAGCACGATAAGGAAGAGCGGATCCGTCGTGGGG
ATGACCTGAGGCTGCAGATGGCAATAGAGGAGAGCAAGAGGGAGACTGGGGGCAAGGAGGAGTCATCTCT
CATGGATCTTGCTGATGTCTTCACAACCCCAGCGCCTCCACAGGCCTCAGACCCTTGGGGGGGCCCGGCA
TCTGTGCCTACTGCTGTCCCTGTGGCTGCTGCCGCTTCAGACCCTTGGGGGGGACCTGCTGTCCCTCCAG
CTGCTGATCCTTGGGGTGGTGCAGCCCCCACACCAGCCTCAGGGGATCCCTGGAGGCCTGCAGCCCCTAC
AGGGCCCTCTGTTGATCCTTGGGGTGGGACCCCAGCTCCTGCAGCTGGAGAGGGGCCCACCCCTGACCCG
TGGGGAAGCTCTGATGGTGGGGCTCCTGTCAGTGGGCCCCCATCTTCTGACCCCTGGGCACCTGCCCCGG
CTTTCTCAGACCCCTGGGGAGGCTCACCTGCAAAGCCCAGCAGCAACGGCACTGCAGTTGGGGGCTTTGA
CACAGAGCCTGATGAGTTCTCAGACTTCGACCGACTCCGCACTGCCCTGCCAACCTCTGGGAGCAGCACG
GGGGAGTTGGAGTTGCTCGCAGGAGAGGTGCCTGCTCGCAGCCCTGGGGCATTCGACATGAGTGGGGTTG
GGGGATCTCTGGCTGAGTCTGTGGGGAGTCCCCCACCTGCTGCAACCCCAACTCCCACCCCCCCAACACG
GAAGACTCCGGAGTCATTCCTAGGCCCTAATGCAGCCCTTGTGGATCTGGACTCGCTGGTGAGCCGACCA
GGCCCCACACCACCAGGATCCAAGGCTTCCAACCCATTCCTTCCAAGCGGAGCTCCGCCCACAGGCCCCT
CTGTCACCAATCCTTTCCAGCCAGCACCCCCTGCAACGCTCACCCTGAACCAGCTCCGTCTCAGTCCTGT
GCCCCCAGTTCCTGGAGCGCCACCCACCTACATCTCTCCTCTTGGTGGAGGCCCTGGCCTGCCCCCCATG
ATGCCCCCAGGTCCCCCAGCCCCCAACACTAACCCCTTCCTCCTATAA

Translation (575 aa):
MSTSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKN
WRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRL
REERAHALKTKEKLAQTATASSAAVGSGPPPEAEQAWPQSSGEEELQLQLALAMSKEEADQPPSCGPEDD
VQLQLALSLSREEHDKEERIRRGDDLRLQMAIEESKRETGGKEESSLMDLADVFTTPAPPQASDPWGGPA
SVPTAVPVAAAASDPWGGPAVPPAADPWGGAAPTPASGDPWRPAAPTGPSVDPWGGTPAPAAGEGPTPDP
WGSSDGGAPVSGPPSSDPWAPAPAFSDPWGGSPAKPSSNGTAVGGFDTEPDEFSDFDRLRTALPTSGSST
GELELLAGEVPARSPGAFDMSGVGGSLAESVGSPPPAATPTPTPPTRKTPESFLGPNAALVDLDSLVSRP
GPTPPGSKASNPFLPSGAPPTGPSVTNPFQPAPPATLTLNQLRLSPVPPVPGAPPTYISPLGGGPGLPPM
MPPGPPAPNTNPFLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH