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Report for CCDS38660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38660.1 Public Mus musculus 3 Clca4b 23 108 98 CCDS HistoryNCBI Gene:99709Re-query CCDS DB by CCDS ID:38660.1Re-query CCDS DB by GeneID:99709See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38660.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098549.3 ENSMUSP00000096149.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098549.3Link to Ensembl Protein Viewer:ENSMUSP00000096149.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098549Re-query CCDS DB by Protein ID:ENSMUSP00000096149
Original member Current member NCBI NM_001033199.3 NP_001028371.1 Accepted alive Link to Nucleotide Sequence:NM_001033199.3Link to Protein Sequence:NP_001028371.1Re-query CCDS DB by Nucleotide ID:NM_001033199Re-query CCDS DB by Protein ID:NP_001028371Link to BLAST:NP_001028371.1

Chromosomal Locations for CCDS 38660.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 144911110 144911525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144911979 144912212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144913249 144913419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144915355 144915622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144916614 144916829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144919256 144919362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144921843 144922020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144922757 144922984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144925138 144925356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144926002 144926179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144927125 144927233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144928199 144928346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144928525 144928665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144932335 144932499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2778 nt):
ATGATGGCTTTCTCCAGAGGGCCTGTTTTCCTCCTCTTCCTCTTGTACCTGCTTTGGGGGTCAGACACTT
CCTTGATAAAGCTGAATGGGAATGGTTATGAAGACATCATTATTGCCATTGATCCTGCTGTGCCAGAAGA
TACAACAATAATTGAACACATAAAGGGAATGGTGACTAAAGCATCTACATACCTTTTTGAAGCTACAGAA
AAAAGATTTTTCTTCAAAAATGTGTCTATATTAATTCCTGAGAGTTGGAAAAACAGTTCCCAGTACAGAA
GGCCAAAACAGGAGAGTTACAAGCATGCTGACATTAAAGTGGCACCTCCCGCCTTCGAGGGCAGAGATGA
GCCCTACACCAGGCAGTTCACACAGTGTGAAGAGAAAGCAGAATACATTCACTTCACCCCTGACTTTGTA
CTGGGGAGAAAACAAGTTGAATATGGAGATTCAGGAAAACTGTTGGTCCATGAATGGGCCCACCTTCGCT
GGGGAGTATTTGATGAGTACAACGAAGACCAGCCATTCTACAGTGCTTCATCAAAGAAAATCGAAGCAAC
AAGGTGCTCCACAGGTATCACGGGTATGAATAGAGTCCATACATGCCAAGGGGGCAGCTGTATAACCAGA
AGGTGCAGAACTAATTCCACCACAAAGTTATATGAAAAGGATTGTCAGTTCTTCCCAGATAAAGTTCAAT
CAGAAAAGGCATCCATAATGTTCATGCAAAGTATCGATTCTGTGACTGAGTTCTGTAAAAAAGAAAACCA
TAATCGAGAGGCTCCAACTCTACATAATGAAAAGTGCCAATGGAGAAGCACTTGGGAAGTAATCAGCAGT
TCTGAGGATTTTAACAGCAGCACGCCCATGGAGACACCACCGGCTCCACCCTTCTTCTCCCTGCTGAGGA
TCAGTGAGAGAATTGTGTGCCTAGTTCTTGATGTGTCAGGGAGTATGAGTTCTTCTGACCGTCTGAATAG
AATGAACCAAGCAGCAAAATACTTTCTAAGCCAGATAATTGAAAATAGGTCCTGGGTAGGGATGGTGCAC
TTTAGTAGCCAGGCCACTATTGTGCATGAGCTGATCCAAATGAACAGTGACATCGAGAGAAACAAGCTCT
TGCAAACTTTACCTACAAGTGCCATTGGAGGGACGTCCATCTGCTCTGGAATCAAGACTGCATTTCAGGT
ATTTAAAAATGGAGAATACCAAACAGATGGGACTGAGATCTTGCTGTTGAGTGATGGGGAGGACAGCACA
GCCAAAGACTGTATTGACGAGGTGAAAGACAGCGGGTCCATAGTTCATTTCATTGCCTTGGGACCATCGG
CTGACTTAGCTGTAACAAACATGAGCATTTTAACAGGTGGAAACCATAAGCTTGCTACAGATGAAGCCCA
GAACAATGGACTCATTGATGCTTTCGGGGCCCTGGCTTCAGAAAATACTGATATCACCCAGAAGTCACTT
CAGCTTGAAAGTAAGGGTGCCATACTGAATAATAGCCTCTGGCTGAATGACACTGTTGTAATTGACAGCA
CCGTGGGAAGGGACACATTCTTTCTTGTCACCTGGAGCAAACAAGCCCCTGCCATTTATCTCAGGGATCC
CAAAGGAACACAAACCACCAATTTCACAATGGACTTTGTTTCCAAAATGGCCTATCTCAGTATCCCAGGA
ACAGCTGAGGTGGGCGTTTGGACTTACAACCTGGAAGCCAAAGAAAACTCAGAGATACTAACAATTACAG
TAACCTCTCGGGCAGCAAATTCTTCTGTGCCACCAATCTCTGTAAATGCTAAGGTAAACACGGACACTAA
CACTTTCCCCAGCCCAATGATTGTGTATGCTGAAGTTCTACAAGGGTACACTCCTATCATTGGAGCCCGA
GTGACAGCCACCATAGAATCTAACAGTGGGAAGACAGAAGAGCTAGTCCTGCTGGACAACGGTGCAGGGG
CTGATGCTTTCAAGGATGATGGGGTCTACTCCAGGTTCTTCACAGCTTATTCAGTGAATGGCAGGTATAG
CTTAAAAGTCCGTGCAGATGGAGGAACAAACTCTGCCAGGAGGAGTTTACGCCACCCATCAAGCAGAGCT
GCATACATACCAGGCTGGGTAGTAGATGGAGAAATTCAAGGGAACCCACCCAGACCCGAAATGACTGAGG
CTACTCAGCCAGTCCTAGAGAATTTCAGCAGGACAGCATCTGGAGGTGCCTTTGTGATGTCCAATGTTCC
AATTGGTCCATTGCCTGATCAGTACCCACCAAATCGAATCACAGACCTCCAGGCCACACTCGATGGGGAA
GAGATCAGTCTAACATGGACGGCCCCAGGAGATGATTATGATGTTGGAAGAGTTCAACAGTATATCATAA
GAACAAGCGAAAATATCATTGATCTCAGAGACAATTTTAATAATTCTCTTCGGGTTGATACTACTAAACT
TACACCAAAAGAAGCCAACTCCAAAGAAACCTTTGCCTTTAAACCAGAAAATATCTCAGAAGAAAATGCA
ACCTACATATTCATTGCCATTGAAAGTGTCGACAAAAACAATTTGAGTTCGGGACCATCCAACATCGCAC
AAGTGGCAATGTTCACCCCTCAGGCAGAGCCTGTCCCTGATGAAAGTCCACGTTCATCAGGAGTTAGTAT
TTCTACTATTGTGCTGTCTGTGGTGGGCTCTGTTGTACTAGTTTGTATTATTGTAAGTACCACTATTTGT
ATCTTAAAGAACAAAAGGTCCTCATCAGGAGCTGCAACAACATTTTGA

Translation (925 aa):
MMAFSRGPVFLLFLLYLLWGSDTSLIKLNGNGYEDIIIAIDPAVPEDTTIIEHIKGMVTKASTYLFEATE
KRFFFKNVSILIPESWKNSSQYRRPKQESYKHADIKVAPPAFEGRDEPYTRQFTQCEEKAEYIHFTPDFV
LGRKQVEYGDSGKLLVHEWAHLRWGVFDEYNEDQPFYSASSKKIEATRCSTGITGMNRVHTCQGGSCITR
RCRTNSTTKLYEKDCQFFPDKVQSEKASIMFMQSIDSVTEFCKKENHNREAPTLHNEKCQWRSTWEVISS
SEDFNSSTPMETPPAPPFFSLLRISERIVCLVLDVSGSMSSSDRLNRMNQAAKYFLSQIIENRSWVGMVH
FSSQATIVHELIQMNSDIERNKLLQTLPTSAIGGTSICSGIKTAFQVFKNGEYQTDGTEILLLSDGEDST
AKDCIDEVKDSGSIVHFIALGPSADLAVTNMSILTGGNHKLATDEAQNNGLIDAFGALASENTDITQKSL
QLESKGAILNNSLWLNDTVVIDSTVGRDTFFLVTWSKQAPAIYLRDPKGTQTTNFTMDFVSKMAYLSIPG
TAEVGVWTYNLEAKENSEILTITVTSRAANSSVPPISVNAKVNTDTNTFPSPMIVYAEVLQGYTPIIGAR
VTATIESNSGKTEELVLLDNGAGADAFKDDGVYSRFFTAYSVNGRYSLKVRADGGTNSARRSLRHPSSRA
AYIPGWVVDGEIQGNPPRPEMTEATQPVLENFSRTASGGAFVMSNVPIGPLPDQYPPNRITDLQATLDGE
EISLTWTAPGDDYDVGRVQQYIIRTSENIIDLRDNFNNSLRVDTTKLTPKEANSKETFAFKPENISEENA
TYIFIAIESVDKNNLSSGPSNIAQVAMFTPQAEPVPDESPRSSGVSISTIVLSVVGSVVLVCIIVSTTIC
ILKNKRSSSGAATTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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